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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18704 (37 seq.)
>W131241482
BARX01000007
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
4220
4130
-
Ser
TGA
[ENA]
¡û
>W131241504
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
17330
17240
-
Ser
TGA
[ENA]
¡û
>W131241505
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
17186
17096
-
Ser
TGA
[ENA]
¡û
>WENV170023773
BCQL01002899
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2516
2606
+
Ser
TGA
[ENA]
¡û
>WENV170023825
BCQL01005210
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2544
2454
-
Ser
TGA
[ENA]
¡û
>WENV170023826
BCQL01005210
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2400
2310
-
Ser
TGA
[ENA]
¡û
>W1910178262
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
225475
225385
-
Ser
TGA
[ENA]
¡û
>W1910178285
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
85415
85505
+
Ser
TGA
[ENA]
¡û
>W2010091601
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
225475
225385
-
Ser
TGA
[ENA]
¡û
>W2010091624
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
85415
85505
+
Ser
TGA
[ENA]
¡û
>W2011858117
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
171801
171891
+
Ser
TGA
[ENA]
¡û
>W2011858134
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
657887
657977
+
Ser
TGA
[ENA]
¡û
>W2011858135
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
658031
658121
+
Ser
TGA
[ENA]
¡û
>W2012330177
WHRY01000002
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
530737
530647
-
Ser
TGA
[ENA]
¡û
>W2012330178
WHRY01000002
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
530593
530503
-
Ser
TGA
[ENA]
¡û
>W2012330180
WHRY01000003
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
320982
321072
+
Ser
TGA
[ENA]
¡û
>W2110016240
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
3688336
3688426
+
Ser
TGA
[ENA]
¡û
>W2110016241
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
3688480
3688570
+
Ser
TGA
[ENA]
¡û
>W2110016278
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
195288
195198
-
Ser
TGA
[ENA]
¡û
>W2110020758
BMDY01000001
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
246907
246817
-
Ser
TGA
[ENA]
¡û
>W2110020774
BMDY01000004
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
69802
69892
+
Ser
TGA
[ENA]
¡û
>W2110020775
BMDY01000004
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
69943
70033
+
Ser
TGA
[ENA]
¡û
>C211007598
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
2119504
2119594
+
Ser
TGA
-
¡û
>C211007646
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3118782
3118692
-
Ser
TGA
-
¡û
>C211007647
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3118638
3118548
-
Ser
TGA
-
¡û
>C211007693
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
2096939
2097029
+
Ser
TGA
-
¡û
>C211007740
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3019887
3019797
-
Ser
TGA
-
¡û
>C211007741
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3019743
3019653
-
Ser
TGA
-
¡û
>C231249157
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
2617280
2617370
+
Ser
TGA
-
¡û
>C231249204
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
3702007
3701917
-
Ser
TGA
-
¡û
>C231249205
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
3701863
3701773
-
Ser
TGA
-
¡û
>C231370407
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1453221
1453311
+
Ser
TGA
-
¡û
>C231370408
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1453365
1453455
+
Ser
TGA
-
¡û
>C231370409
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1888171
1888261
+
Ser
TGA
-
¡û
>C161049683
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1194220
1194130
-
Ser
TGA
-
¡û
>C161049684
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1194079
1193989
-
Ser
TGA
-
¡û
>C161049685
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
674432
674342
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK