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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187390 (33 seq.)
>WENV180435259
OBWL01019059
[OBWL] human gut metagenome; faeces
609
533
-
Pro
CGG
[ENA]
¢þ
>WENV180546616
OCIU01002669
[OCIU] human gut metagenome; human gut
5847
5923
+
Pro
CGG
[ENA]
¢þ
>WENV180826974
ODJZ01135935
[ODJZ] human metagenome; G_DNA_Stool
131
207
+
Pro
CGG
[ENA]
¢þ
>WENV180956866
ODUK01004818
[ODUK] human metagenome; G_DNA_Stool
3743
3819
+
Pro
CGG
[ENA]
¢þ
>WENV180972320
ODUU01405495
[ODUU] human metagenome; G_DNA_Stool
111
35
-
Pro
CGG
[ENA]
¢þ
>WENV181603918
OGLI01002767
[OGLI] metagenome; Human gut stool
2719
2795
+
Pro
CGG
[ENA]
¢þ
>WENV181630082
OGMP01031946
[OGMP] metagenome; Human gut stool
79
155
+
Pro
CGG
[ENA]
¢þ
>WENV181867160
OGWV01048450
[OGWV] human gut metagenome; faeces
232
156
-
Pro
CGG
[ENA]
¢þ
>WENV181897113
OGXS01031456
[OGXS] human gut metagenome; faeces
176
100
-
Pro
CGG
[ENA]
¢þ
>WENV181912904
OGYE01001567
[OGYE] human gut metagenome; faeces
14643
14719
+
Pro
CGG
[ENA]
¢þ
>WENV181948710
OGZE01025955
[OGZE] human gut metagenome; faeces
941
1014
+
Pro
CGG
[ENA]
¢þ
>WENV181962299
OGZO01122872
[OGZO] human gut metagenome; faeces
448
524
+
Pro
CGG
[ENA]
¢þ
>WENV182097973
OHHP01007043
[OHHP] human gut metagenome; feces
1606
1530
-
Pro
CGG
[ENA]
¢þ
>WENV182162498
OHMH01001178
[OHMH] human gut metagenome; feces
107
183
+
Pro
CGG
[ENA]
¢þ
>WENV182526945
OIWT01107419
[OIWT] human gut metagenome; faeces
8
84
+
Pro
CGG
[ENA]
¢þ
>WENV182758487
OJRI01003814
[OJRI] human gut metagenome; stool sample
3667
3743
+
Pro
CGG
[ENA]
¢þ
>WENV182774107
OJRZ01020711
[OJRZ] human gut metagenome; human gut
1041
1117
+
Pro
CGG
[ENA]
¢þ
>WENV182775434
OJSA01031889
[OJSA] human gut metagenome; human gut
778
854
+
Pro
CGG
[ENA]
¢þ
>WENV182776356
OJSB01008658
[OJSB] human gut metagenome; human gut
1672
1596
-
Pro
CGG
[ENA]
¢þ
>WENV182874772
OKRW01032470
[OKRW] human gut metagenome; faeces
360
436
+
Pro
CGG
[ENA]
¢þ
>WENV183176296
OLPF01004571
[OLPF] human gut metagenome; faeces
1435
1511
+
Pro
CGG
[ENA]
¢þ
>WENV183241258
OLRA01076974
[OLRA] human gut metagenome; faeces
376
452
+
Pro
CGG
[ENA]
¢þ
>WENV183375948
OLYA01039304
[OLYA] human gut metagenome; feces
527
603
+
Pro
CGG
[ENA]
¢þ
>C181115554
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1226822
1226898
+
Pro
CGG
-
¡û
>C191031557
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1191986
1192062
+
Pro
CGG
-
¡û
>C191031612
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1226751
1226827
+
Pro
CGG
-
¡û
>C191072223
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1226818
1226894
+
Pro
CGG
-
¡û
>W1910227342
FNLI01000010
Bacillota
Merdimmobilis hominis Marseille-P2769 [FNLI]
52352
52428
+
Pro
CGG
[ENA]
¡û
>W10115285
ADJQ01000004
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
16924
16848
-
Pro
CGG
[ENA]
¡û
>C11108750
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1226819
1226895
+
Pro
CGG
[Ensembl]
¡û
>W11118871
ADJQ01000004
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
16924
16848
-
Pro
CGG
[ENA]
¡û
>W1610058611
BBZZ01000001
Bacillota
Clostridia bacterium UC5.1-2F7 [BBZZ]
223287
223211
-
Pro
CGG
[ENA]
¡û
>W1710055370
BBZZ01000001
Bacillota
Clostridia bacterium UC5.1-2F7 [BBZZ]
223287
223211
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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