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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187569 (110 seq.)
>W1710785510
LJHX01000126
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
10675
10599
-
Arg
CCG
[ENA]
¡û
>W1710796659
LJSH01000002
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
196183
196107
-
Arg
CCG
[ENA]
¡û
>W1710866243
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
5645
5569
-
Arg
CCG
[ENA]
¡û
>W1710878672
LMRD01000007
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
688490
688566
+
Arg
CCG
[ENA]
¡û
>W1710989575
LPWA01000105
Alphaproteobacteria
Mesorhizobium loti [LPWA]
7275
7351
+
Arg
CCG
[ENA]
¡û
>W1710989821
LPWE01000010
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
174932
174856
-
Arg
CCG
[ENA]
¡û
>W1711257254
LYTM01000030
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
3993
3917
-
Arg
CCG
[ENA]
¡û
>W1711353197
MDDT01000089
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
553836
553912
+
Arg
CCG
[ENA]
¡û
>W1711353203
MDDU01000001
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
418825
418749
-
Arg
CCG
[ENA]
¡û
>W1711354756
MDFL01000138
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
45482
45558
+
Arg
CCG
[ENA]
¡û
>W1711386044
MEEV01000046
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
5737
5661
-
Arg
CCG
[ENA]
¡û
>W1711388570
MEHT01000010
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
74958
75034
+
Arg
CCG
[ENA]
¡û
>W1711766359
MUYH01000016
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
3920
3844
-
Arg
CCG
[ENA]
¡û
>W131100406
AOUN01000003
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
573581
573657
+
Arg
CCG
[ENA]
¡û
>W131216131
ATVO01000009
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
1323
1247
-
Arg
CCG
[ENA]
¡û
>W131155900
AQOY01000003
Alphaproteobacteria
Robiginitomaculum antarcticum DSM 21748 [AQOY]
130537
130461
-
Arg
CCG
[ENA]
¡û
>w022235
AAWJ01000001
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [AAWJ]
1190144
1190220
+
Arg
CCG
[ENA]
¡û
>w015783
AAPJ01000007
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
154126
154202
+
Arg
CCG
[ENA]
¡û
>WENV180099839
OANK01000344
[OANK] marine metagenome; ENVO:00002010
3036
3112
+
Arg
CCG
[ENA]
¢þ
>WENV180358252
OBNP01016353
[OBNP] marine metagenome; seawater
296
372
+
Arg
CCG
[ENA]
¢þ
>WENV180361949
OBNW01012339
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
459
383
-
Arg
CCG
[ENA]
¢þ
>WENV180380930
OBOR01057520
[OBOR] marine metagenome; ENVO 00002227
430
354
-
Arg
CCG
[ENA]
¢þ
>WENV180585298
OCOL01000344
[OCOL] marine metagenome; ENVO:00002010
3036
3112
+
Arg
CCG
[ENA]
¢þ
>WENV180586599
OCOM01148535
[OCOM] marine metagenome; seawater
128
54
-
Arg
CCG
[ENA]
¢þ
>WENV180587135
OCON01055961
[OCON] marine metagenome; seawater
243
319
+
Arg
CCG
[ENA]
¢þ
>WENV180592720
OCOW01043043
[OCOW] marine metagenome; Sterivex cartridges
333
257
-
Arg
CCG
[ENA]
¢þ
>WENV181163508
OEIQ01060510
[OEIQ] soil metagenome; soil
209
285
+
Arg
CCG
[ENA]
¢þ
>WENV181233582
OFET01000010
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
196179
196103
-
Arg
CCG
[ENA]
¢þ
>WENV181304872
OFID01004577
[OFID] marine metagenome; sea ice
200
276
+
Arg
CCG
[ENA]
¢þ
>WENV181309420
OFIV01014034
[OFIV] marine metagenome; seawater
7
83
+
Arg
CCG
[ENA]
¢þ
>WENV181392190
OFRW01008880
[OFRW] seawater metagenome; seawater
127
203
+
Arg
CCG
[ENA]
¢þ
>C08007364
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
112869
112796
-
Arg
CCG
[Ensembl]
¡û
>W141235995
BAYV01000102
Alphaproteobacteria
alpha proteobacterium Q-1 [BAYV]
38523
38447
-
Arg
CCG
[ENA]
¡û
>WENV182549306
OJBY01000188
[OJBY] seawater metagenome; Sea water
34731
34655
-
Arg
CCG
[ENA]
¢þ
>WENV182565570
OJEH01013402
[OJEH] seawater metagenome; Sea water
1513
1589
+
Arg
CCG
[ENA]
¢þ
>WENV182583002
OJHC01009081
[OJHC] seawater metagenome; Sea water
764
840
+
Arg
CCG
[ENA]
¢þ
>W141266681
CCMY01000069
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
10335
10411
+
Arg
CCG
[ENA]
¡û
>W141266740
CCMZ01000059
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
21317
21241
-
Arg
CCG
[ENA]
¡û
>W141266775
CCNA01000023
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
1347
1423
+
Arg
CCG
[ENA]
¡û
>W141266821
CCNB01000016
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
108762
108686
-
Arg
CCG
[ENA]
¡û
>WENV183616525
OOED01062755
[OOED] marine metagenome; seawater
208
132
-
Arg
CCG
[ENA]
¢þ
>WENV183624008
OOGB01011773
[OOGB] marine metagenome; sea ice
231
307
+
Arg
CCG
[ENA]
¢þ
>WENV183626911
OOGK01009223
[OOGK] marine metagenome; seawater
127
203
+
Arg
CCG
[ENA]
¢þ
>WENV183629788
OOGQ01008550
[OOGQ] marine metagenome; seawater
267
343
+
Arg
CCG
[ENA]
¢þ
>WENV183687862
ORMF011200706
[ORMF] groundwater metagenome; groundwater
46
122
+
Arg
CCG
[ENA]
¢þ
>WENV183730381
PJTS01000001
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1068
992
-
Arg
CCG
[ENA]
¢þ
>WENV183731482
PJTT01000008
[PJTT] soil metagenome; Soil (2) enriched on wood chips
184264
184340
+
Arg
CCG
[ENA]
¢þ
>WENV183731590
PJTT01000038
[PJTT] soil metagenome; Soil (2) enriched on wood chips
1068
992
-
Arg
CCG
[ENA]
¢þ
>WENV183737292
PJUD01003018
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3730
3806
+
Arg
CCG
[ENA]
¢þ
>WENV183739985
PJUF01000114
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
74730
74654
-
Arg
CCG
[ENA]
¢þ
>WENV183740636
PJUF01005013
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1739
1815
+
Arg
CCG
[ENA]
¢þ
>WENV183744908
PJUL01000600
[PJUL] feces metagenome; Chicken feces enriched on filter paper
17834
17910
+
Arg
CCG
[ENA]
¢þ
>WENV170122492
CENN01079736
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2325
2249
-
Arg
CCG
[ENA]
¢þ
>WENV170323597
CESS01010803
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1914
1990
+
Arg
CCG
[ENA]
¢þ
>WENV170567286
FLLY01114294
[FLLY] seawater metagenome; seawater
208
132
-
Arg
CCG
[ENA]
¢þ
>WENV170606078
FUWD010602711
[FUWD] metagenome; unknown
271
195
-
Arg
CCG
[ENA]
¢þ
>WENV170668128
LADL02001263
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
17937
17861
-
Arg
CCG
[ENA]
¢þ
>WENV170668176
LADL02001602
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3576
3500
-
Arg
CCG
[ENA]
¢þ
>WENV170682686
LFIK01000899
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
3087
3163
+
Arg
CCG
[ENA]
¢þ
>WENV170781857
MAAC01002574
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
295
219
-
Arg
CCG
[ENA]
¢þ
>WENV170782316
MAAC01009677
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
41155
41079
-
Arg
CCG
[ENA]
¢þ
>WENV170783040
MAAC01013277
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
878
954
+
Arg
CCG
[ENA]
¢þ
>WENV170787873
MDSV01024985
[MDSV] marine metagenome; seawater
1619
1695
+
Arg
CCG
[ENA]
¢þ
>WENV170864944
MDTB01112547
[MDTB] marine metagenome; seawater
73
-1
-
Arg
CCG
[ENA]
¢þ
>WENV170887636
MDTC01243286
[MDTC] marine metagenome; seawater
1324
1248
-
Arg
CCG
[ENA]
¢þ
>WENV170953457
MEHZ011646510
[MEHZ] marine metagenome; marine surface water
1425
1349
-
Arg
CCG
[ENA]
¢þ
>C181155061
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
580661
580737
+
Arg
CCG
-
¡û
>C181155111
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
580661
580737
+
Arg
CCG
-
¡û
>C181170890
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
1383932
1383856
-
Arg
CCG
-
¡û
>C191015712
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
217093
217017
-
Arg
CCG
-
¡û
>C191018784
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
22571
22647
+
Arg
CCG
-
¡û
>C191125527
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
3139270
3139346
+
Arg
CCG
-
¡û
>C191125772
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
2706972
2707048
+
Arg
CCG
-
¡û
>C191185619
CP041025
Alphaproteobacteria
Paremcibacter congregatus ZYLT [CP041025]
1530586
1530510
-
Arg
CCG
-
¡û
>W1910501751
FYAT01000001
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
712419
712343
-
Arg
CCG
[ENA]
¡û
>W1911242465
NSFT01000007
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
184719
184643
-
Arg
CCG
[ENA]
¡û
>W1911242732
NSFZ01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
37250
37326
+
Arg
CCG
[ENA]
¡û
>W1911242780
NSGA01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
151865
151941
+
Arg
CCG
[ENA]
¡û
>W1911242823
NSGB01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
334823
334747
-
Arg
CCG
[ENA]
¡û
>W1911242982
NSGE01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
302213
302137
-
Arg
CCG
[ENA]
¡û
>W1911243025
NSGF01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
276485
276561
+
Arg
CCG
[ENA]
¡û
>W1911695541
QMBQ01000005
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
655582
655506
-
Arg
CCG
[ENA]
¡û
>W1810053676
PDEM01000009
Alphaproteobacteria
Paremcibacter congregatus ZYL [PDEM]
631613
631537
-
Arg
CCG
[ENA]
¡û
>W1810445030
PZKG01000023
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
5734
5810
+
Arg
CCG
[ENA]
¡û
>W1810684494
QKYL01000146
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
53435
53511
+
Arg
CCG
[ENA]
¡û
>W1810685983
QKZS01000002
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
351443
351367
-
Arg
CCG
[ENA]
¡û
>W1810735804
QOLB01000113
Alphaproteobacteria
Candidatus Halocynthiibacter alkanivorans Bin25-node5 [QOLB]
8902
8978
+
Arg
CCG
[ENA]
¡û
>C151002847
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
619143
619219
+
Arg
CCG
[Ensembl]
¡û
>C151079642
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
352427
352503
+
Arg
CCG
[Ensembl]
¡û
>C151101073
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
1825534
1825458
-
Arg
CCG
[Ensembl]
¡û
>WENV032165
AACY021424341
Marine microbial communities from Global Ocean Sampling (GOS)
381
457
+
Arg
CCG
[ENA]
>WENV041734
AACY022182478
Marine microbial communities from Global Ocean Sampling (GOS)
703
779
+
Arg
CCG
[ENA]
>WENV042011
AACY022205593
Marine microbial communities from Global Ocean Sampling (GOS)
638
562
-
Arg
CCG
[ENA]
>W1511541918
JZEX01000022
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
38639
38563
-
Arg
CCG
[ENA]
¡û
>WENV061066
AACY023421220
Marine microbial communities from Global Ocean Sampling (GOS)
479
403
-
Arg
CCG
[ENA]
>W1610056841
BBWP01000006
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
212055
212131
+
Arg
CCG
[ENA]
¡û
>W1610590965
LDRW01000005
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
75606
75530
-
Arg
CCG
[ENA]
¡û
>W1610649316
LJHX01000126
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
10675
10599
-
Arg
CCG
[ENA]
¡û
>W1610660616
LJSH01000002
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
196183
196107
-
Arg
CCG
[ENA]
¡û
>W1610728589
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
5645
5569
-
Arg
CCG
[ENA]
¡û
>W1610741018
LMRD01000007
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
688490
688566
+
Arg
CCG
[ENA]
¡û
>W1610844451
LPWA01000105
Alphaproteobacteria
Mesorhizobium loti [LPWA]
7275
7351
+
Arg
CCG
[ENA]
¡û
>W1611020230
LYTM01000030
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
3993
3917
-
Arg
CCG
[ENA]
¡û
>W1710053540
BBWP01000006
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
212055
212131
+
Arg
CCG
[ENA]
¡û
>W1710528159
FNMZ01000002
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
796610
796686
+
Arg
CCG
[ENA]
¡û
>W1710532659
FNQM01000051
Alphaproteobacteria
Rubrimonas cliftonensis [FNQM]
3693
3617
-
Arg
CCG
[ENA]
¡û
>W1710571231
FOVT01000001
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
93494
93418
-
Arg
CCG
[ENA]
¡û
>W1710582195
FPKU01000004
Alphaproteobacteria
Devosia enhydra [FPKU]
310740
310816
+
Arg
CCG
[ENA]
¡û
>W1710593233
FRDF01000017
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
3108
3032
-
Arg
CCG
[ENA]
¡û
>W1710710245
LDRW01000005
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
75606
75530
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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