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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187647 (116 seq.)
>W1710867636
LMIL01000004
Actinomycetota
Oerskovia sp. Root22 [LMIL]
16011
15935
-
Pro
GGG
[ENA]
¡û
>W1710867767
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
1052491
1052565
+
Pro
GGG
[ENA]
¡û
>W1710876058
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1670081
1670005
-
Pro
GGG
[ENA]
¡û
>W1710881165
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1528894
1528970
+
Pro
GGG
[ENA]
¡û
>W1711127126
LUPQ01000042
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
13169
13245
+
Pro
GGG
[ENA]
¡û
>W1711134998
LUYL01000013
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
23296
23220
-
Pro
GGG
[ENA]
¡û
>W1711308531
MAQA01000021
Actinomycetota
Oerskovia enterophila [MAQA]
25103
25177
+
Pro
GGG
[ENA]
¡û
>W1711360797
MDJY01000045
Actinomycetota
Clavibacter michiganensis [MDJY]
63784
63710
-
Pro
GGG
[ENA]
¡û
>W1711385611
MEEJ01000014
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
31218
31292
+
Pro
GGG
[ENA]
¡û
>W1711461099
MJGM01000087
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
206381
206457
+
Pro
GGG
[ENA]
¡û
>W1711461403
MJGT01000061
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
247253
247329
+
Pro
GGG
[ENA]
¡û
>W1711461566
MJGX01000053
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
138683
138759
+
Pro
GGG
[ENA]
¡û
>W1711463324
MJIR01000061
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
2889
2813
-
Pro
GGG
[ENA]
¡û
>W1711503480
MKTQ01000017
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
62519
62445
-
Pro
GGG
[ENA]
¡û
>W131161639
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
242214
242138
-
Pro
GGG
[ENA]
¡û
>C171111582
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1499828
1499902
+
Pro
GGG
-
¡û
>WENV180690155
OCZS010000075
[OCZS] soil metagenome; soil
14917
14843
-
Pro
GGG
[ENA]
¢þ
>WENV180691106
OCZS010061939
[OCZS] soil metagenome; soil
561
637
+
Pro
GGG
[ENA]
¢þ
>WENV180733839
ODGZ01000978
[ODGZ] human metagenome; G_DNA_Supragingival plaque
14131
14057
-
Pro
GGG
[ENA]
¢þ
>WENV180750614
ODHS01004413
[ODHS] human metagenome; G_DNA_Supragingival plaque
4
78
+
Pro
GGG
[ENA]
¢þ
>WENV180750641
ODHS01004928
[ODHS] human metagenome; G_DNA_Supragingival plaque
4
80
+
Pro
GGG
[ENA]
¢þ
>WENV180987136
ODVK01005595
[ODVK] human metagenome; G_DNA_Supragingival plaque
3376
3300
-
Pro
GGG
[ENA]
¢þ
>WENV180987153
ODVK01006122
[ODVK] human metagenome; G_DNA_Supragingival plaque
4
78
+
Pro
GGG
[ENA]
¢þ
>WENV181066858
ODZI01002509
[ODZI] human metagenome; G_DNA_Supragingival plaque
7315
7241
-
Pro
GGG
[ENA]
¢þ
>WENV181068059
ODZI01111864
[ODZI] human metagenome; G_DNA_Supragingival plaque
417
341
-
Pro
GGG
[ENA]
¢þ
>WENV181120390
OEFJ01071176
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
133
59
-
Pro
GGG
[ENA]
¢þ
>WENV181126107
OEFV01006621
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
1065
991
-
Pro
GGG
[ENA]
¢þ
>WENV181166368
OEIU01000143
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
40034
39959
-
Pro
GGG
[ENA]
¢þ
>WENV181166967
OEIU01005048
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5729
5655
-
Pro
GGG
[ENA]
¢þ
>WENV181416276
OGCL01066917
[OGCL] hot springs metagenome; Hot spring water
243
169
-
Pro
GGG
[ENA]
¢þ
>W141146507
AWVQ01000342
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
1792
1868
+
Pro
GGG
[ENA]
¡û
>W141187519
AYME01000010
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
219180
219104
-
Pro
GGG
[ENA]
¡û
>WENV182540380
OJAJ01000010
[OJAJ] seawater metagenome; Sea water
122
196
+
Pro
GGG
[ENA]
¢þ
>WENV183734827
PJUA01000038
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
61431
61357
-
Pro
GGG
[ENA]
¢þ
>WENV170009886
APMI01004515
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1845
1769
-
Pro
GGG
[ENA]
¢þ
>WENV170012208
APMI01136375
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1091
1017
-
Pro
GGG
[ENA]
¢þ
>WENV170246906
CEQQ01004228
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7820
7744
-
Pro
GGG
[ENA]
¢þ
>WENV170579263
FUFK010038453
[FUFK] metagenome; unknown
41842
41768
-
Pro
GGG
[ENA]
¢þ
>WENV170585484
FUFK010295154
[FUFK] metagenome; unknown
39
113
+
Pro
GGG
[ENA]
¢þ
>WENV170589645
FUFK010658433
[FUFK] metagenome; unknown
327
401
+
Pro
GGG
[ENA]
¢þ
>WENV170591122
FUFK010752602
[FUFK] metagenome; unknown
30355
30281
-
Pro
GGG
[ENA]
¢þ
>WENV170593573
FUFK010915191
[FUFK] metagenome; unknown
167
241
+
Pro
GGG
[ENA]
¢þ
>WENV170595626
FUFK011885495
[FUFK] metagenome; unknown
282
208
-
Pro
GGG
[ENA]
¢þ
>WENV170595849
FUFK011998151
[FUFK] metagenome; unknown
167
243
+
Pro
GGG
[ENA]
¢þ
>WENV170733837
LULK01000177
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
2929
3005
+
Pro
GGG
[ENA]
¢þ
>WENV170760774
LUMU01000103
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
13169
13245
+
Pro
GGG
[ENA]
¢þ
>C181052434
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
1074730
1074656
-
Pro
GGG
-
¡û
>C181196609
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
2924647
2924573
-
Pro
GGG
-
¡û
>C181219285
LT618780
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
1290598
1290523
-
Pro
GGG
-
¡û
>C191074597
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1456189
1456265
+
Pro
GGG
-
¡û
>C191101008
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
3195657
3195581
-
Pro
GGG
-
¡û
>C191130627
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
2683816
2683741
-
Pro
GGG
-
¡û
>W1910373898
FUHU01000045
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
127564
127640
+
Pro
GGG
[ENA]
¡û
>W1910636827
LPVV01000038
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
406281
406205
-
Pro
GGG
[ENA]
¡û
>W1910839838
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2234381
2234455
+
Pro
GGG
[ENA]
¡û
>W1911566990
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
1306319
1306244
-
Pro
GGG
[ENA]
¡û
>W1911567514
PCPQ01000002
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
337313
337237
-
Pro
GGG
[ENA]
¡û
>W1911570406
PCZR01000001
Actinomycetota
Cutibacterium modestum T33958 [PCZR]
471487
471413
-
Pro
GGG
[ENA]
¡û
>W1911681949
QKLB01000005
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
216333
216408
+
Pro
GGG
[ENA]
¡û
>W1911768175
QXGH01000051
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
34596
34671
+
Pro
GGG
[ENA]
¡û
>W1911798588
QYRT01000020
Actinomycetota
Subtercola vilae DB165 [QYRT]
20274
20348
+
Pro
GGG
[ENA]
¡û
>W1810277710
PSUB01000012
Actinomycetota
Rathayibacter sp. AY2B9 [PSUB]
15376
15450
+
Pro
GGG
[ENA]
¡û
>W1810277867
PSUF01000007
Actinomycetota
Rathayibacter rathayi AY2B4 [PSUF]
71593
71519
-
Pro
GGG
[ENA]
¡û
>W1810279380
PSVO01000013
Actinomycetota
Rathayibacter sp. AY1E2 [PSVO]
88324
88250
-
Pro
GGG
[ENA]
¡û
>W1810279481
PSVR01000001
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
270855
270781
-
Pro
GGG
[ENA]
¡û
>W1810279546
PSVS01000039
Actinomycetota
Rathayibacter sp. AY1D7 [PSVS]
16434
16360
-
Pro
GGG
[ENA]
¡û
>W1810280335
PSWK01000024
Actinomycetota
Rathayibacter sp. AY1B7 [PSWK]
15115
15189
+
Pro
GGG
[ENA]
¡û
>W1810280476
PSWO01000003
Actinomycetota
Rathayibacter sp. AY1B1 [PSWO]
156685
156611
-
Pro
GGG
[ENA]
¡û
>W1810281680
PSXP01000018
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
14853
14927
+
Pro
GGG
[ENA]
¡û
>W1810281891
PSXU01000016
Actinomycetota
Rathayibacter iranicus FH154 [PSXU]
14871
14945
+
Pro
GGG
[ENA]
¡û
>W1810282170
PSYA01000010
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
22096
22170
+
Pro
GGG
[ENA]
¡û
>W1810365188
PVTW01000013
Actinomycetota
Isoptericola sp. CG 20/1183 CG 20 [PVTW]
112643
112717
+
Pro
GGG
[ENA]
¡û
>W1810365235
PVTX01000012
Actinomycetota
Isoptericola halotolerans CG 23 [PVTX]
112646
112720
+
Pro
GGG
[ENA]
¡û
>W1810681626
QKTA01000006
Actinomycetota
Curtobacterium sp. MCLR17_051 [QKTA]
69599
69674
+
Pro
GGG
[ENA]
¡û
>W1810886022
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
1270324
1270248
-
Pro
GGG
[ENA]
¡û
>SRA1032142
SRR035087.561949
454 Sequencing (SRP001808)
199
123
-
Pro
GGG
[SRA]
>SRA1045380
SRR035093.81188
454 Sequencing (SRP001814)
109
35
-
Pro
GGG
[SRA]
>SRA1045725
SRR035093.157225
454 Sequencing (SRP001814)
440
513
+
Pro
GGG
[SRA]
>SRA1046001
SRR035093.214624
454 Sequencing (SRP001814)
264
190
-
Pro
GGG
[SRA]
>SRA1046406
SRR035093.300845
454 Sequencing (SRP001814)
227
301
+
Pro
GGG
[SRA]
>SRA1047072
SRR035093.449177
454 Sequencing (SRP001814)
23
97
+
Pro
GGG
[SRA]
>SRA1047429
SRR035093.536386
454 Sequencing (SRP001814)
114
188
+
Pro
GGG
[SRA]
>WENV033247
AACY021513224
Marine microbial communities from Global Ocean Sampling (GOS)
105
29
-
Pro
GGG
[ENA]
>W10123323
ADZU01000041
Actinomycetota
Cutibacterium modestum HL044PA1 [ADZU]
117307
117381
+
Pro
GGG
[ENA]
¡û
>W1511313258
JPSY01000004
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
23428
23502
+
Pro
GGG
[ENA]
¡û
>W1511352462
JROD01000023
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
19414
19488
+
Pro
GGG
[ENA]
¡û
>W1511387222
JSUH01000002
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
366675
366599
-
Pro
GGG
[ENA]
¡û
>W11130067
ADZU01000041
Actinomycetota
Cutibacterium modestum HL044PA1 [ADZU]
117307
117381
+
Pro
GGG
[ENA]
¡û
>W1511510223
JXRU01000030
Actinomycetota
Microbacterium sp. SA39 [JXRU]
26187
26263
+
Pro
GGG
[ENA]
¡û
>W1511511088
JXSQ01000006
Actinomycetota
Leucobacter komagatae VKM ST2845 [JXSQ]
121864
121788
-
Pro
GGG
[ENA]
¡û
>W1511524534
JYFC01000012
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
2306
2232
-
Pro
GGG
[ENA]
¡û
>W1610027120
AVPJ01000004
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
286641
286567
-
Pro
GGG
[ENA]
¡û
>W1610068306
BCRF01000028
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
21250
21326
+
Pro
GGG
[ENA]
¡û
>W1610069396
BCSL01000013
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
68650
68576
-
Pro
GGG
[ENA]
¡û
>W1610072302
BCUV01000006
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
32995
32921
-
Pro
GGG
[ENA]
¡û
>W1610074058
BCWJ01000014
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
101358
101434
+
Pro
GGG
[ENA]
¡û
>W1610590041
LDRC01000056
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
47169
47245
+
Pro
GGG
[ENA]
¡û
>W1610729982
LMIL01000004
Actinomycetota
Oerskovia sp. Root22 [LMIL]
16011
15935
-
Pro
GGG
[ENA]
¡û
>W1610730113
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
1052491
1052565
+
Pro
GGG
[ENA]
¡û
>W1610732217
LMKB01000004
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
93587
93511
-
Pro
GGG
[ENA]
¡û
>W1610738378
LMOW01000003
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
22034
22110
+
Pro
GGG
[ENA]
¡û
>W1610738404
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1670081
1670005
-
Pro
GGG
[ENA]
¡û
>W1610738502
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
691196
691272
+
Pro
GGG
[ENA]
¡û
>W1610742440
LMSC01000012
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
230490
230564
+
Pro
GGG
[ENA]
¡û
>W1610743511
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1528894
1528970
+
Pro
GGG
[ENA]
¡û
>W1610743560
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
957120
957044
-
Pro
GGG
[ENA]
¡û
>W1610938240
LUPQ01000042
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
13169
13245
+
Pro
GGG
[ENA]
¡û
>W1610946118
LUYL01000013
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
23296
23220
-
Pro
GGG
[ENA]
¡û
>W1610950736
LVFF01000016
Actinomycetota
Dietzia maris [LVFF]
68657
68583
-
Pro
GGG
[ENA]
¡û
>W1611056190
MAQA01000021
Actinomycetota
Oerskovia enterophila [MAQA]
25103
25177
+
Pro
GGG
[ENA]
¡û
>W1710023285
AVPJ01000004
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
286641
286567
-
Pro
GGG
[ENA]
¡û
>W1710050427
BBRL01000006
Actinomycetota
Demequina sp. NBRC 110055 [BBRL]
100179
100103
-
Pro
GGG
[ENA]
¡û
>W1710069504
BCUV01000006
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
32995
32921
-
Pro
GGG
[ENA]
¡û
>W1710071176
BCWJ01000014
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
101358
101434
+
Pro
GGG
[ENA]
¡û
>W1710596032
FTMI01000003
Actinomycetota
Cellulosimicrobium aquatile [FTMI]
304142
304216
+
Pro
GGG
[ENA]
¡û
>W1710608095
FXAP01000009
Actinomycetota
Plantibacter flavus [FXAP]
57791
57715
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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