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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187706 (200 seq.)
>W1711683648
MRYO01000009
Bacillota
Ligilactobacillus ruminis [MRYO]
764
839
+
Pro
TGG
[ENA]
¡û
>W1711683683
MRYO01000082
Bacillota
Ligilactobacillus ruminis [MRYO]
485
560
+
Pro
TGG
[ENA]
¡û
>W1711683699
MRYP01000006
Bacillota
Ligilactobacillus ruminis [MRYP]
86101
86026
-
Pro
TGG
[ENA]
¡û
>W1711683745
MRYP01000035
Bacillota
Ligilactobacillus ruminis [MRYP]
17100
17025
-
Pro
TGG
[ENA]
¡û
>W1711683760
MRYQ01000006
Bacillota
Ligilactobacillus ruminis [MRYQ]
91038
90963
-
Pro
TGG
[ENA]
¡û
>W1711683797
MRYQ01000028
Bacillota
Ligilactobacillus ruminis [MRYQ]
17145
17070
-
Pro
TGG
[ENA]
¡û
>WENV180289874
OBIU01000353
[OBIU] human gut metagenome; human gut
21117
21042
-
Pro
TGG
[ENA]
¢þ
>WENV180319840
OBKN01013025
[OBKN] human gut metagenome; human gut
750
825
+
Pro
TGG
[ENA]
¢þ
>WENV180320359
OBKN01186462
[OBKN] human gut metagenome; human gut
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV180334762
OBLF01047735
[OBLF] metagenome; feces
152
79
-
Pro
TGG
[ENA]
¢þ
>WENV180402038
OBRN01044918
[OBRN] human gut metagenome; ENVO:feces
123
198
+
Pro
TGG
[ENA]
¢þ
>WENV180712150
ODFT01000016
[ODFT] human metagenome; G_DNA_Posterior fornix
132418
132345
-
Pro
TGG
[ENA]
¢þ
>WENV180717221
ODGB01000263
[ODGB] human metagenome; G_DNA_Posterior fornix
672
745
+
Pro
TGG
[ENA]
¢þ
>WENV180717258
ODGC01000174
[ODGC] human metagenome; G_DNA_Vaginal introitus
2907
2980
+
Pro
TGG
[ENA]
¢þ
>WENV180822688
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
673
746
+
Pro
TGG
[ENA]
¢þ
>WENV180822750
ODJV01000201
[ODJV] human metagenome; G_DNA_Posterior fornix
1500
1427
-
Pro
TGG
[ENA]
¢þ
>WENV180828633
ODKA01016023
[ODKA] human metagenome; G_DNA_Stool
1051
976
-
Pro
TGG
[ENA]
¢þ
>WENV180914557
ODSY01000454
[ODSY] human metagenome; G_DNA_Posterior fornix
673
746
+
Pro
TGG
[ENA]
¢þ
>WENV181001913
ODVW01049382
[ODVW] human metagenome; G_DNA_Buccal mucosa
194
269
+
Pro
TGG
[ENA]
¢þ
>WENV181013039
ODWM01000304
[ODWM] human metagenome; G_DNA_Posterior fornix
673
746
+
Pro
TGG
[ENA]
¢þ
>WENV181025175
ODXA01000008
[ODXA] human metagenome; G_DNA_Posterior fornix
4581
4654
+
Pro
TGG
[ENA]
¢þ
>WENV181025260
ODXA01001321
[ODXA] human metagenome; G_DNA_Posterior fornix
672
745
+
Pro
TGG
[ENA]
¢þ
>WENV181027274
ODXD01000047
[ODXD] human metagenome; G_DNA_Buccal mucosa
6483
6408
-
Pro
TGG
[ENA]
¢þ
>WENV181030426
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
673
746
+
Pro
TGG
[ENA]
¢þ
>WENV181131350
OEGB01000041
[OEGB] human metagenome; G_DNA_Posterior fornix
5006
4933
-
Pro
TGG
[ENA]
¢þ
>WENV181258767
OFFV01002606
[OFFV] mouse gut metagenome; faeces
4080
4007
-
Pro
TGG
[ENA]
¢þ
>WENV181276070
OFGK01000513
[OFGK] mouse gut metagenome; faeces
3951
4027
+
Pro
TGG
[ENA]
¢þ
>WENV181283447
OFGQ01003671
[OFGQ] mouse gut metagenome; faeces
6599
6523
-
Pro
TGG
[ENA]
¢þ
>WENV181329980
OFLY01000837
[OFLY] human gut metagenome; human gut
190
265
+
Pro
TGG
[ENA]
¢þ
>WENV181333448
OFMB01000133
[OFMB] human gut metagenome; human gut
55978
55903
-
Pro
TGG
[ENA]
¢þ
>WENV181355238
OFMT01000979
[OFMT] human gut metagenome; human gut
605
680
+
Pro
TGG
[ENA]
¢þ
>WENV181684722
OGOV01022044
[OGOV] human gut metagenome; faeces
108
183
+
Pro
TGG
[ENA]
¢þ
>WENV181713957
OGPR01000267
[OGPR] human gut metagenome; faeces
61419
61344
-
Pro
TGG
[ENA]
¢þ
>WENV181736381
OGQH01000328
[OGQH] human gut metagenome; faeces
1804
1879
+
Pro
TGG
[ENA]
¢þ
>WENV181786251
OGRN01001198
[OGRN] human gut metagenome; faeces
634
709
+
Pro
TGG
[ENA]
¢þ
>WENV181879152
OGXE01052889
[OGXE] human gut metagenome; faeces
52
127
+
Pro
TGG
[ENA]
¢þ
>WENV182295882
OHWG01000055
[OHWG] human gut metagenome; feces
755
828
+
Pro
TGG
[ENA]
¢þ
>WENV182353353
OIBL01002390
[OIBL] human gut metagenome; feces
4121
4196
+
Pro
TGG
[ENA]
¢þ
>WENV182360006
OICB01000045
[OICB] human gut metagenome; feces
75098
75025
-
Pro
TGG
[ENA]
¢þ
>WENV182363060
OICE01028111
[OICE] human gut metagenome; feces
85
160
+
Pro
TGG
[ENA]
¢þ
>WENV182370323
OICT01000043
[OICT] human gut metagenome; feces
75098
75025
-
Pro
TGG
[ENA]
¢þ
>WENV182374683
OIDB01021004
[OIDB] human gut metagenome; feces
507
582
+
Pro
TGG
[ENA]
¢þ
>WENV182375630
OIDD01000054
[OIDD] human gut metagenome; feces
75368
75295
-
Pro
TGG
[ENA]
¢þ
>WENV182389791
OIED01004115
[OIED] human gut metagenome; feces
230
157
-
Pro
TGG
[ENA]
¢þ
>WENV182507532
OIVM01001729
[OIVM] human gut metagenome; human gut
1086
1159
+
Pro
TGG
[ENA]
¢þ
>WENV182891840
OKSH01005580
[OKSH] human gut metagenome; faeces
4595
4668
+
Pro
TGG
[ENA]
¢þ
>WENV182927407
OKUM01030207
[OKUM] human gut metagenome; feces
466
541
+
Pro
TGG
[ENA]
¢þ
>WENV182930196
OKUQ01053051
[OKUQ] human gut metagenome; feces
343
418
+
Pro
TGG
[ENA]
¢þ
>WENV182943033
OKVH01018319
[OKVH] human gut metagenome; human gut
1146
1071
-
Pro
TGG
[ENA]
¢þ
>WENV182943793
OKVI01000870
[OKVI] human gut metagenome; human gut
14474
14401
-
Pro
TGG
[ENA]
¢þ
>WENV183166694
OLOY01000589
[OLOY] human gut metagenome; faeces
5644
5570
-
Pro
TGG
[ENA]
¢þ
>WENV183166784
OLOY01001095
[OLOY] human gut metagenome; faeces
11961
11886
-
Pro
TGG
[ENA]
¢þ
>WENV183491438
OMGG01008738
[OMGG] human gut metagenome; human gut
1006
1079
+
Pro
TGG
[ENA]
¢þ
>WENV183522943
ONZR01012998
[ONZR] human gut metagenome; human gut
573
648
+
Pro
TGG
[ENA]
¢þ
>WENV183553237
OOBK01001432
[OOBK] human gut metagenome; human gut
9109
9184
+
Pro
TGG
[ENA]
¢þ
>WENV183767700
PPYE01382532
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
477
402
-
Pro
TGG
[ENA]
¢þ
>WENV183772464
PPYF01016968
[PPYF] human gut metagenome; stool from patient with Crohn's disease
22665
22739
+
Pro
TGG
[ENA]
¢þ
>WENV183772870
PPYF01024388
[PPYF] human gut metagenome; stool from patient with Crohn's disease
892
966
+
Pro
TGG
[ENA]
¢þ
>WENV183781350
PPYF01195951
[PPYF] human gut metagenome; stool from patient with Crohn's disease
13718
13792
+
Pro
TGG
[ENA]
¢þ
>WENV183788648
PPYF01370219
[PPYF] human gut metagenome; stool from patient with Crohn's disease
86
162
+
Pro
TGG
[ENA]
¢þ
>WENV183790648
PPYF01414369
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2378
2453
+
Pro
TGG
[ENA]
¢þ
>C181018915
CP016270
Bacillota
Lactiplantibacillus plantarum subsp. plantarum CGMCC 1.557 [CP016270]
57568
57644
+
Pro
TGG
-
¡û
>C181018959
CP016270
Bacillota
Lactiplantibacillus plantarum subsp. plantarum CGMCC 1.557 [CP016270]
1157711
1157638
-
Pro
TGG
-
¡û
>C181023129
CP017066
Bacillota
Lactiplantibacillus plantarum LP3 [CP017066]
897647
897723
+
Pro
TGG
-
¡û
>C181023162
CP017066
Bacillota
Lactiplantibacillus plantarum LP3 [CP017066]
2020308
2020235
-
Pro
TGG
-
¡û
>C181027656
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
1248492
1248419
-
Pro
TGG
-
¡û
>C181160245
CP027805
Bacillota
Limosilactobacillus reuteri WHH1689 [CP027805]
1056189
1056113
-
Pro
TGG
-
¡û
>C181226928
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
637612
637685
+
Pro
TGG
-
¡û
>C191034431
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
828724
828797
+
Pro
TGG
-
¡û
>C191035483
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
427620
427693
+
Pro
TGG
-
¡û
>C191035521
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1821189
1821115
-
Pro
TGG
-
¡û
>C191092802
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
370178
370251
+
Pro
TGG
-
¡û
>C191092840
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
1710181
1710107
-
Pro
TGG
-
¡û
>W09123081
ACGS01000001
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
334
409
+
Pro
TGG
[ENA]
¡û
>W09123124
ACGS01000073
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
502
577
+
Pro
TGG
[ENA]
¡û
>W09127667
ACLD01000155
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
73
-1
-
Pro
TGG
[ENA]
¡û
>W09128170
ACLN01000022
Bacillota
Lactobacillus iners DSM 13335 [ACLN]
987
914
-
Pro
TGG
[ENA]
¡û
>W1910621394
LKFG01000031
Bacillota
Lacticaseibacillus paracasei FAM18108 [LKFG]
667
742
+
Pro
TGG
[ENA]
¡û
>W1910622957
LKGJ01000016
Bacillota
Lacticaseibacillus paracasei FAM6161 [LKGJ]
709
784
+
Pro
TGG
[ENA]
¡û
>W1910798014
MSUJ01000011
Bacillota
Lactiplantibacillus plantarum Y2-2 [MSUJ]
21247
21323
+
Pro
TGG
[ENA]
¡û
>W1910799259
MSVH01000016
Bacillota
Lactiplantibacillus plantarum B3-1 [MSVH]
21123
21199
+
Pro
TGG
[ENA]
¡û
>W1910799286
MSVH01000116
Bacillota
Lactiplantibacillus plantarum B3-1 [MSVH]
444
517
+
Pro
TGG
[ENA]
¡û
>W1910799312
MSVI01000012
Bacillota
Lactiplantibacillus plantarum B3-2 [MSVI]
21123
21199
+
Pro
TGG
[ENA]
¡û
>W1910799340
MSVI01000111
Bacillota
Lactiplantibacillus plantarum B3-2 [MSVI]
478
405
-
Pro
TGG
[ENA]
¡û
>W1910800283
MSWB01000021
Bacillota
Lactiplantibacillus plantarum R2.2.1 [MSWB]
12395
12471
+
Pro
TGG
[ENA]
¡û
>W1910800315
MSWB01000099
Bacillota
Lactiplantibacillus plantarum R2.2.1 [MSWB]
495
568
+
Pro
TGG
[ENA]
¡û
>W1910802021
MSXJ01000015
Bacillota
Lactiplantibacillus plantarum R14.2.2 [MSXJ]
12395
12471
+
Pro
TGG
[ENA]
¡û
>W1910802053
MSXJ01000095
Bacillota
Lactiplantibacillus plantarum R14.2.2 [MSXJ]
478
405
-
Pro
TGG
[ENA]
¡û
>W1910855287
NBLE01000031
Bacillota
Lactobacillus iners KA00186 [NBLE]
785
858
+
Pro
TGG
[ENA]
¡û
>W1910902808
NGPC01000030
Bacillota
Limosilactobacillus reuteri 609e [NGPC]
9377
9450
+
Pro
TGG
[ENA]
¡û
>W1910902812
NGPC01000030
Bacillota
Limosilactobacillus reuteri 609e [NGPC]
849
773
-
Pro
TGG
[ENA]
¡û
>W1910902834
NGPC01000045
Bacillota
Limosilactobacillus reuteri 609e [NGPC]
867
942
+
Pro
TGG
[ENA]
¡û
>W1910902874
NGPD01000079
Bacillota
Limosilactobacillus reuteri 609d [NGPD]
6354
6430
+
Pro
TGG
[ENA]
¡û
>W1910902881
NGPD01000089
Bacillota
Limosilactobacillus reuteri 609d [NGPD]
2463
2536
+
Pro
TGG
[ENA]
¡û
>W1910902889
NGPD01000095
Bacillota
Limosilactobacillus reuteri 609d [NGPD]
766
841
+
Pro
TGG
[ENA]
¡û
>W1910903109
NGPH01000040
Bacillota
Limosilactobacillus reuteri 117w [NGPH]
11370
11443
+
Pro
TGG
[ENA]
¡û
>W1910903113
NGPH01000040
Bacillota
Limosilactobacillus reuteri 117w [NGPH]
932
856
-
Pro
TGG
[ENA]
¡û
>W1910903127
NGPH01000054
Bacillota
Limosilactobacillus reuteri 117w [NGPH]
1610
1535
-
Pro
TGG
[ENA]
¡û
>W1910903180
NGPI01000042
Bacillota
Limosilactobacillus reuteri 117r [NGPI]
11383
11456
+
Pro
TGG
[ENA]
¡û
>W1910903184
NGPI01000042
Bacillota
Limosilactobacillus reuteri 117r [NGPI]
945
869
-
Pro
TGG
[ENA]
¡û
>W1910903196
NGPI01000058
Bacillota
Limosilactobacillus reuteri 117r [NGPI]
1381
1306
-
Pro
TGG
[ENA]
¡û
>W1910903245
NGPJ01000037
Bacillota
Limosilactobacillus reuteri 117n [NGPJ]
1642
1569
-
Pro
TGG
[ENA]
¡û
>W1910903379
NGPL01000028
Bacillota
Limosilactobacillus reuteri 114h [NGPL]
8643
8716
+
Pro
TGG
[ENA]
¡û
>W1910903394
NGPL01000047
Bacillota
Limosilactobacillus reuteri 114h [NGPL]
9914
9839
-
Pro
TGG
[ENA]
¡û
>W1910903504
NGPN01000035
Bacillota
Limosilactobacillus reuteri 111v [NGPN]
12081
12157
+
Pro
TGG
[ENA]
¡û
>W1910903510
NGPN01000035
Bacillota
Limosilactobacillus reuteri 111v [NGPN]
1643
1570
-
Pro
TGG
[ENA]
¡û
>W1910903519
NGPN01000052
Bacillota
Limosilactobacillus reuteri 111v [NGPN]
1730
1655
-
Pro
TGG
[ENA]
¡û
>W1910903580
NGPO01000059
Bacillota
Limosilactobacillus reuteri 111l [NGPO]
1639
1566
-
Pro
TGG
[ENA]
¡û
>W1910903637
NGPP01000025
Bacillota
Limosilactobacillus reuteri 111f [NGPP]
98908
98981
+
Pro
TGG
[ENA]
¡û
>W1910903703
NGPQ01000030
Bacillota
Limosilactobacillus reuteri 111b [NGPQ]
11383
11456
+
Pro
TGG
[ENA]
¡û
>W1910904032
NGPV01000024
Bacillota
Limosilactobacillus reuteri 105p [NGPV]
1642
1569
-
Pro
TGG
[ENA]
¡û
>W1910904497
NGQC01000047
Bacillota
Limosilactobacillus reuteri 103v [NGQC]
1642
1569
-
Pro
TGG
[ENA]
¡û
>W1910904562
NGQD01000091
Bacillota
Limosilactobacillus reuteri 103p [NGQD]
10680
10753
+
Pro
TGG
[ENA]
¡û
>W1910904607
NGQE01000006
Bacillota
Limosilactobacillus reuteri 103o [NGQE]
1381
1306
-
Pro
TGG
[ENA]
¡û
>W1910904620
NGQE01000013
Bacillota
Limosilactobacillus reuteri 103o [NGQE]
45
118
+
Pro
TGG
[ENA]
¡û
>W1910904657
NGQE01000127
Bacillota
Limosilactobacillus reuteri 103o [NGQE]
2817
2741
-
Pro
TGG
[ENA]
¡û
>W1910904709
NGQF01000044
Bacillota
Limosilactobacillus reuteri 103b [NGQF]
1639
1566
-
Pro
TGG
[ENA]
¡û
>W1910922733
NIGH01000045
Bacillota
Lactiplantibacillus plantarum SF15C [NIGH]
14998
14925
-
Pro
TGG
[ENA]
¡û
>W1911161566
NPOB01000054
Bacillota
Lacticaseibacillus paracasei subsp. paracasei NTU 101 [NPOB]
357
432
+
Pro
TGG
[ENA]
¡û
>W1911595746
PNGO01000006
Bacillota
Lactobacillus iners UMB1051 [PNGO]
4501
4574
+
Pro
TGG
[ENA]
¡û
>W1911595808
PNGP01000011
Bacillota
Lactobacillus iners UMB0033 [PNGP]
715
788
+
Pro
TGG
[ENA]
¡û
>W1911595856
PNGQ01000009
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
787
714
-
Pro
TGG
[ENA]
¡û
>W1911630700
PTLS01000009
Bacillota
Limosilactobacillus reuteri R2lc [PTLS]
39937
39861
-
Pro
TGG
[ENA]
¡û
>W1911754019
QWMU01000005
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
37531
37456
-
Pro
TGG
[ENA]
¡û
>W1911754038
QWMU01000020
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
177
253
+
Pro
TGG
[ENA]
¡û
>W1810472574
QAGX01000011
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
488
561
+
Pro
TGG
[ENA]
¡û
>W1810473090
QAHG01000011
Bacillota
Lactiplantibacillus plantarum DS14_9 [QAHG]
112969
112896
-
Pro
TGG
[ENA]
¡û
>W1810473108
QAHG01000018
Bacillota
Lactiplantibacillus plantarum DS14_9 [QAHG]
940
1016
+
Pro
TGG
[ENA]
¡û
>W1810473933
QAHU01000043
Bacillota
Lactobacillus sp. DS2_6 [QAHU]
484
559
+
Pro
TGG
[ENA]
¡û
>W1810488449
QAZJ01000023
Bacillota
Lacticaseibacillus rhamnosus DS3_11 [QAZJ]
14631
14558
-
Pro
TGG
[ENA]
¡û
>W1810488625
QAZM01000038
Bacillota
Limosilactobacillus reuteri DS17_10 [QAZM]
11173
11246
+
Pro
TGG
[ENA]
¡û
>W1810488629
QAZM01000038
Bacillota
Limosilactobacillus reuteri DS17_10 [QAZM]
610
534
-
Pro
TGG
[ENA]
¡û
>W1810488637
QAZM01000065
Bacillota
Limosilactobacillus reuteri DS17_10 [QAZM]
768
843
+
Pro
TGG
[ENA]
¡û
>W1810705394
QMJG01000017
Bacillota
Lactiplantibacillus paraplantarum KMB_599 [QMJG]
829
902
+
Pro
TGG
[ENA]
¡û
>W1810706189
QMJW01000200
Bacillota
Lacticaseibacillus paracasei KMB_623 [QMJW]
545
620
+
Pro
TGG
[ENA]
¡û
>W1810834703
QSQR01000002
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
416
491
+
Pro
TGG
[ENA]
¡û
>W1810834739
QSQR01000007
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
554
629
+
Pro
TGG
[ENA]
¡û
>C151075287
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
876895
876969
+
Pro
TGG
[Ensembl]
¡û
>C151075309
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1735739
1735664
-
Pro
TGG
[Ensembl]
¡û
>C151075326
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1637347
1637272
-
Pro
TGG
[Ensembl]
¡û
>C151075337
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1323542
1323467
-
Pro
TGG
[Ensembl]
¡û
>W11107233
ACWR01000024
Bacillota
Lactobacillus iners 7_1_47FAA [ACWR]
618
691
+
Pro
TGG
[ENA]
¡û
>W1511007748
JHAB01000046
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
34125
34050
-
Pro
TGG
[ENA]
¡û
>W1511008082
JHAJ01000112
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
389
464
+
Pro
TGG
[ENA]
¡û
>W1511008107
JHAJ01000118
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
557
632
+
Pro
TGG
[ENA]
¡û
>W11137464
AEHN01000021
Bacillota
Lactobacillus iners LactinV 11V1-d [AEHN]
788
715
-
Pro
TGG
[ENA]
¡û
>W11137534
AEHP01000038
Bacillota
Lactobacillus iners LactinV 03V1-b [AEHP]
788
715
-
Pro
TGG
[ENA]
¡û
>W11137596
AEHQ01000088
Bacillota
Lactobacillus iners LactinV 01V1-a [AEHQ]
825
752
-
Pro
TGG
[ENA]
¡û
>W11137612
AEHR01000011
Bacillota
Lactobacillus iners SPIN 2503V10-D [AEHR]
787
714
-
Pro
TGG
[ENA]
¡û
>W11139578
AEKH01000030
Bacillota
Lactobacillus iners LEAF 2053A-b [AEKH]
618
691
+
Pro
TGG
[ENA]
¡û
>W11139612
AEKI01000006
Bacillota
Lactobacillus iners LEAF 2052A-d [AEKI]
618
691
+
Pro
TGG
[ENA]
¡û
>W11139650
AEKJ01000004
Bacillota
Lactobacillus iners LEAF 2062A-h1 [AEKJ]
825
752
-
Pro
TGG
[ENA]
¡û
>W11139700
AEKK01000005
Bacillota
Lactobacillus iners LEAF 3008A-a [AEKK]
755
682
-
Pro
TGG
[ENA]
¡û
>W11143484
AEPX01000016
Bacillota
Lactobacillus iners ATCC 55195 [AEPX]
787
714
-
Pro
TGG
[ENA]
¡û
>W11151729
AEXJ01000013
Bacillota
Lactobacillus iners UPII 143-D [AEXJ]
618
691
+
Pro
TGG
[ENA]
¡û
>W11151762
AEXK01000006
Bacillota
Lactobacillus iners UPII 60-B [AEXK]
618
691
+
Pro
TGG
[ENA]
¡û
>W11151946
AEXP01000036
Bacillota
Lactobacillus iners SPIN 1401G [AEXP]
299
226
-
Pro
TGG
[ENA]
¡û
>W11168644
AFOJ01000002
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
604370
604295
-
Pro
TGG
[ENA]
¡û
>W11168676
AFOJ01000008
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
114176
114101
-
Pro
TGG
[ENA]
¡û
>W11176993
AFYE01000090
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
333
408
+
Pro
TGG
[ENA]
¡û
>W11177002
AFYE01000093
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
501
576
+
Pro
TGG
[ENA]
¡û
>C121004208
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
280062
280137
+
Pro
TGG
[Ensembl]
¡û
>C121004242
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
1503595
1503520
-
Pro
TGG
[Ensembl]
¡û
>C161077603
CP014786
Bacillota
Limosilactobacillus reuteri ZLR003 [CP014786]
149039
149115
+
Pro
TGG
[Ensembl]
¡û
>C161077652
CP014786
Bacillota
Limosilactobacillus reuteri ZLR003 [CP014786]
573786
573711
-
Pro
TGG
[Ensembl]
¡û
>C161077668
CP014786
Bacillota
Limosilactobacillus reuteri ZLR003 [CP014786]
137302
137229
-
Pro
TGG
[Ensembl]
¡û
>C161093799
CP016071
Bacillota
Lactiplantibacillus plantarum NCU116 [CP016071]
2441378
2441451
+
Pro
TGG
[Ensembl]
¡û
>C161093830
CP016071
Bacillota
Lactiplantibacillus plantarum NCU116 [CP016071]
330609
330533
-
Pro
TGG
[Ensembl]
¡û
>W1610029412
AWYA01000058
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
541
466
-
Pro
TGG
[ENA]
¡û
>W1610029436
AWYA01000066
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
24658
24583
-
Pro
TGG
[ENA]
¡û
>W1610030989
AYYL01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
532
607
+
Pro
TGG
[ENA]
¡û
>W1610032806
AZCM01000003
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
69305
69232
-
Pro
TGG
[ENA]
¡û
>W1610032871
AZCN01000050
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
18326
18251
-
Pro
TGG
[ENA]
¡û
>W1610032883
AZCN01000050
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
13490
13415
-
Pro
TGG
[ENA]
¡û
>W1610032940
AZCO01000096
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
2154
2079
-
Pro
TGG
[ENA]
¡û
>W1610035769
AZET01000002
Bacillota
Lactobacillus iners DSM 13335 [AZET]
141182
141109
-
Pro
TGG
[ENA]
¡û
>W1610037622
AZGE01000001
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
182065
182141
+
Pro
TGG
[ENA]
¡û
>W1610044223
BBAJ01000086
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [BBAJ]
8662
8587
-
Pro
TGG
[ENA]
¡û
>W1610045591
BBBQ01000070
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
647
720
+
Pro
TGG
[ENA]
¡û
>W1610073250
BCVU01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
16971
16896
-
Pro
TGG
[ENA]
¡û
>W1610073266
BCVU01000115
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
1414
1339
-
Pro
TGG
[ENA]
¡û
>W1610437058
FJVL01000007
Bacillota
Lactiplantibacillus plantarum [FJVL]
79908
79984
+
Pro
TGG
[ENA]
¡û
>W1610437087
FJVL01000043
Bacillota
Lactiplantibacillus plantarum [FJVL]
3126
3053
-
Pro
TGG
[ENA]
¡û
>W1610528190
JQBA01000002
Bacillota
Limosilactobacillus ingluviei [JQBA]
84603
84678
+
Pro
TGG
[ENA]
¡û
>W1610528202
JQBA01000011
Bacillota
Limosilactobacillus ingluviei [JQBA]
478
553
+
Pro
TGG
[ENA]
¡û
>W1610647374
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
844722
844649
-
Pro
TGG
[ENA]
¡û
>W1610943756
LUWH01000007
Bacillota
Lactiplantibacillus plantarum [LUWH]
670
743
+
Pro
TGG
[ENA]
¡û
>W1610943792
LUWH01000082
Bacillota
Lactiplantibacillus plantarum [LUWH]
1705
1629
-
Pro
TGG
[ENA]
¡û
>W1610945015
LUXC01000030
Bacillota
Lactiplantibacillus plantarum [LUXC]
246364
246291
-
Pro
TGG
[ENA]
¡û
>W1610945050
LUXC01000054
Bacillota
Lactiplantibacillus plantarum [LUXC]
163385
163461
+
Pro
TGG
[ENA]
¡û
>W1710026782
AWYA01000058
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
541
466
-
Pro
TGG
[ENA]
¡û
>W1710026806
AWYA01000066
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
24658
24583
-
Pro
TGG
[ENA]
¡û
>W1710027941
AYYL01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
532
607
+
Pro
TGG
[ENA]
¡û
>W1710030137
AZCM01000003
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
69305
69232
-
Pro
TGG
[ENA]
¡û
>W1710032808
AZET01000002
Bacillota
Lactobacillus iners DSM 13335 [AZET]
141182
141109
-
Pro
TGG
[ENA]
¡û
>W1710070368
BCVU01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
16971
16896
-
Pro
TGG
[ENA]
¡û
>W1710070384
BCVU01000115
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
1414
1339
-
Pro
TGG
[ENA]
¡û
>W1710546294
FOCC01000008
Bacillota
Ligilactobacillus ruminis [FOCC]
1
76
+
Pro
TGG
[ENA]
¡û
>W1710562954
FOPI01000007
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
86255
86180
-
Pro
TGG
[ENA]
¡û
>W1710563003
FOPI01000036
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
989
1064
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
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(Sample source for ENV)
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Representative sequence of each cluster
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