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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18775 (64 seq.)
>W1710919589
LNXT01000040
Gammaproteobacteria
Legionella birminghamensis [LNXT]
147951
147861
-
Ser
GCT
[ENA]
¡û
>W1710920357
LNYM01000013
Gammaproteobacteria
Legionella micdadei [LNYM]
249926
250016
+
Ser
GCT
[ENA]
¡û
>W1710920451
LNYP01000003
Gammaproteobacteria
Legionella oakridgensis [LNYP]
54809
54899
+
Ser
GCT
[ENA]
¡û
>W1710920603
LNYS01000012
Gammaproteobacteria
Legionella quinlivanii [LNYS]
23236
23146
-
Ser
GCT
[ENA]
¡û
>W1711414023
MGXK01000137
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_51_14 [MGXK]
50858
50948
+
Ser
GCT
[ENA]
¡û
>WENV011455
AACY020311288
Marine microbial communities from Global Ocean Sampling (GOS)
3929
4021
+
Ser
GCT
[ENA]
>C171110820
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
1852234
1852324
+
Ser
GCT
-
¡û
>C171110879
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
1371180
1371090
-
Ser
GCT
-
¡û
>W131156039
AQPB01000051
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
59992
60082
+
Ser
GCT
[ENA]
¡û
>W131161715
AQXY01000025
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
166505
166595
+
Ser
GCT
[ENA]
¡û
>W131161874
AQYC01000007
Gammaproteobacteria
Thioalkalivibrio sp. ALMg9 [AQYC]
327554
327644
+
Ser
GCT
[ENA]
¡û
>W131162026
AQYF01000014
Gammaproteobacteria
Thioalkalivibrio sp. AKL8 [AQYF]
86638
86728
+
Ser
GCT
[ENA]
¡û
>W131173698
ARHW01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
68144
68234
+
Ser
GCT
[ENA]
¡û
>W131173761
ARHX01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ4 [ARHX]
554303
554393
+
Ser
GCT
[ENA]
¡û
>W131173826
ARHZ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ARh3 [ARHZ]
79982
80072
+
Ser
GCT
[ENA]
¡û
>W131174066
ARIE01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ6 [ARIE]
12399
12309
-
Ser
GCT
[ENA]
¡û
>W131177081
ARKN01000008
Gammaproteobacteria
Thioalkalivibrio sp. AL5 [ARKN]
52757
52847
+
Ser
GCT
[ENA]
¡û
>W131178137
ARLI01000046
Gammaproteobacteria
Thioalkalivibrio sp. ALMg2 [ARLI]
83798
83888
+
Ser
GCT
[ENA]
¡û
>W131179419
ARMJ01000008
Gammaproteobacteria
Thioalkalivibrio sp. AKL7 [ARMJ]
71535
71625
+
Ser
GCT
[ENA]
¡û
>WENV180062487
MPLX02289948
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
39
129
+
Ser
GCT
[ENA]
¡û
>WENV180069269
MPLZ02096415
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
10227
10317
+
Ser
GCT
[ENA]
¡û
>WENV180075868
MPMA02240622
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
10318
10408
+
Ser
GCT
[ENA]
¡û
>WENV180078947
MPMB02134793
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
380
290
-
Ser
GCT
[ENA]
¡û
>WENV180093479
MPMF02323475
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
488
578
+
Ser
GCT
[ENA]
¡û
>WENV180108815
OAPI01001808
[OAPI] marine metagenome; ENVO.00002150
10
100
+
Ser
GCT
[ENA]
¡û
>WENV180264344
OBEQ011562243
[OBEQ] groundwater metagenome; groundwater
81
171
+
Ser
GCT
[ENA]
¡û
>WENV180293811
OBIY01001489
[OBIY] beach sand metagenome; beach sand
407
317
-
Ser
GCT
[ENA]
¡û
>WENV180368214
OBOF01039901
[OBOF] marine metagenome; ENVO:00002010
266
176
-
Ser
GCT
[ENA]
¡û
>W141220990
AZYK01000059
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
505
415
-
Ser
GCT
[ENA]
¡û
>WENV170322155
CESR01116027
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
369
279
-
Ser
GCT
[ENA]
¡û
>WENV170383106
CETX01075468
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
246
156
-
Ser
GCT
[ENA]
¡û
>WENV170395303
CEUC01098500
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
655
745
+
Ser
GCT
[ENA]
¡û
>WENV170618002
FUWD012946731
[FUWD] metagenome; unknown
218
128
-
Ser
GCT
[ENA]
¡û
>WENV170641013
JFJP01032399
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5690
5779
+
Ser
GCT
[ENA]
¡û
>WENV170883756
MDTC01171522
[MDTC] marine metagenome; seawater
3867
3777
-
Ser
GCT
[ENA]
¡û
>W09125873
ACIU01000004
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [ACIU] K90mix [ACIU]
28969
29059
+
Ser
GCT
[ENA]
¡û
>C141003238
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
1380998
1380908
-
Ser
GCT
[Ensembl]
¡û
>W1910814173
MVJN01000002
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
397982
398072
+
Ser
GCT
[ENA]
¡û
>C151081606
CP011367
Gammaproteobacteria
Thioalkalivibrio versutus D301 [CP011367]
1973879
1973789
-
Ser
GCT
[Ensembl]
¡û
>C151103458
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
1523822
1523732
-
Ser
GCT
[Ensembl]
¡û
>W2010146929
CAAAHV010000040
Gammaproteobacteria
Legionella birminghamensis 1407-AL-H [CAAAHV]
4574
4664
+
Ser
GCT
[ENA]
¡û
>W2010147246
CAAAID010000003
Gammaproteobacteria
Legionella nagasakiensis JCM 15315 [CAAAID]
1283
1193
-
Ser
GCT
[ENA]
¡û
>W2010147541
CAAAIK010000010
Gammaproteobacteria
Legionella quinlivanii 1442-AUS-E [CAAAIK]
84911
85001
+
Ser
GCT
[ENA]
¡û
>W2010148475
CAAAJH010000001
Gammaproteobacteria
Legionella sp. 2055-AUS-E [CAAAJH]
387849
387759
-
Ser
GCT
[ENA]
¡û
>W2010633015
JABTVM010000004
Gammaproteobacteria
Tatlockia micdadei 2014LM [JABTVM]
195398
195488
+
Ser
GCT
[ENA]
¡û
>W2010917802
MVJN01000002
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
397982
398072
+
Ser
GCT
[ENA]
¡û
>W2011510328
RZGR01000030
Gammaproteobacteria
Legionella sp. km714 [RZGR]
549
459
-
Ser
GCT
[ENA]
¡û
>W2011510371
RZGS01000029
Gammaproteobacteria
Legionella sp. km711 [RZGS]
30398
30488
+
Ser
GCT
[ENA]
¡û
>W2011510411
RZGT01000029
Gammaproteobacteria
Legionella sp. km542 [RZGT]
30399
30489
+
Ser
GCT
[ENA]
¡û
>W2011510473
RZGV01000017
Gammaproteobacteria
Legionella sp. km524 [RZGV]
47156
47246
+
Ser
GCT
[ENA]
¡û
>W2011829614
UGOX01000001
Gammaproteobacteria
Legionella quinlivanii NCTC12433 [UGOX]
2131711
2131801
+
Ser
GCT
[ENA]
¡û
>W2110752072
NHSH01000084
Gammaproteobacteria
Halochromatium roseum DSM 18859 [NHSH]
3780
3690
-
Ser
GCT
[ENA]
¡û
>WENV038700
AACY021955400
Marine microbial communities from Global Ocean Sampling (GOS)
691
599
-
Ser
GCT
[ENA]
>WENV070546
AACY023813141
Marine microbial communities from Global Ocean Sampling (GOS)
1022
930
-
Ser
GCT
[ENA]
>WENV071384
AACY023845308
Marine microbial communities from Global Ocean Sampling (GOS)
583
675
+
Ser
GCT
[ENA]
>W1610584603
LCUA01000023
Gammaproteobacteria
Legionella oakridgensis [LCUA]
412
322
-
Ser
GCT
[ENA]
¡û
>W1610777487
LNXT01000040
Gammaproteobacteria
Legionella birminghamensis [LNXT]
147951
147861
-
Ser
GCT
[ENA]
¡û
>W1610778255
LNYM01000013
Gammaproteobacteria
Legionella micdadei [LNYM]
249926
250016
+
Ser
GCT
[ENA]
¡û
>W1610778349
LNYP01000003
Gammaproteobacteria
Legionella oakridgensis [LNYP]
54809
54899
+
Ser
GCT
[ENA]
¡û
>W1610778501
LNYS01000012
Gammaproteobacteria
Legionella quinlivanii [LNYS]
23236
23146
-
Ser
GCT
[ENA]
¡û
>W1710507755
FMVN01000004
Gammaproteobacteria
Legionella micdadei [FMVN]
66765
66675
-
Ser
GCT
[ENA]
¡û
>W1710539376
FNVH01000005
Gammaproteobacteria
Legionella quinlivanii DSM 21216 [FNVH]
261256
261346
+
Ser
GCT
[ENA]
¡û
>W1710703794
LCUA01000023
Gammaproteobacteria
Legionella oakridgensis [LCUA]
412
322
-
Ser
GCT
[ENA]
¡û
>W1710703828
LCUB01000004
Gammaproteobacteria
Legionella micdadei [LCUB]
200871
200961
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK