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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18787 (34 seq.)
>W1711372787
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
244444
244534
+
Ser
GGA
[ENA]
¡û
>C171026745
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
43587
43677
+
Ser
GGA
-
¡û
>C171026984
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
1258001
1258091
+
Ser
GGA
-
¡û
>C171027088
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
702102
702192
+
Ser
GGA
-
¡û
>WENV016338
AACY020461421
Marine microbial communities from Global Ocean Sampling (GOS)
290
198
-
Ser
GGA
[ENA]
>WENV016479
AACY020464393
Marine microbial communities from Global Ocean Sampling (GOS)
190
282
+
Ser
GGA
[ENA]
>WENV180113847
OAPR01037399
[OAPR] marine metagenome; seawater
58
148
+
Ser
GGA
[ENA]
¡û
>WENV182556680
OJDG01034884
[OJDG] seawater metagenome; Sea water
473
563
+
Ser
GGA
[ENA]
¡û
>WENV182560282
OJDT01024495
[OJDT] seawater metagenome; Sea water
162
72
-
Ser
GGA
[ENA]
¡û
>WENV182579458
OJGS01011600
[OJGS] seawater metagenome; Sea water
1551
1638
+
Ser
GGA
[ENA]
¡û
>WENV170570203
FLMP01463278
[FLMP] seawater metagenome; seawater
211
301
+
Ser
GGA
[ENA]
¡û
>C201075844
CP038913
Gammaproteobacteria
Piscirickettsia salmonis Psal-010a [CP038913]
2239421
2239331
-
Ser
GGA
-
¡û
>C201075899
CP038918
Gammaproteobacteria
Piscirickettsia salmonis Psal-010b [CP038918]
1937861
1937771
-
Ser
GGA
-
¡û
>C201076031
CP038932
Gammaproteobacteria
Piscirickettsia salmonis Psal-025 [CP038932]
1086455
1086545
+
Ser
GGA
-
¡û
>C201076120
CP038937
Gammaproteobacteria
Piscirickettsia salmonis Psal-026 [CP038937]
2229593
2229503
-
Ser
GGA
-
¡û
>C201076231
CP038947
Gammaproteobacteria
Piscirickettsia salmonis Psal-028 [CP038947]
2003849
2003759
-
Ser
GGA
-
¡û
>C201076792
CP039032
Gammaproteobacteria
Piscirickettsia salmonis Psal-070 [CP039032]
2252860
2252770
-
Ser
GGA
-
¡û
>C201077015
CP039050
Gammaproteobacteria
Piscirickettsia salmonis Psal-081 [CP039050]
1928211
1928121
-
Ser
GGA
-
¡û
>C201077403
CP039087
Gammaproteobacteria
Piscirickettsia salmonis Psal-111 [CP039087]
1937424
1937334
-
Ser
GGA
-
¡û
>C201077956
CP039181
Gammaproteobacteria
Piscirickettsia salmonis Psal-158 [CP039181]
1104899
1104989
+
Ser
GGA
-
¡û
>C201078012
CP039186
Gammaproteobacteria
Piscirickettsia salmonis Psal-159 [CP039186]
1104947
1105037
+
Ser
GGA
-
¡û
>C201081619
CP039868
Gammaproteobacteria
Piscirickettsia salmonis Psal-113 [CP039868]
1937146
1937056
-
Ser
GGA
-
¡û
>C201244447
CP050938
Gammaproteobacteria
Piscirickettsia salmonis Ps-2192A [CP050938]
1288364
1288454
+
Ser
GGA
-
¡û
>C211144011
CP061189
Gammaproteobacteria
Piscirickettsia salmonis Ps12201A [CP061189]
2168459
2168369
-
Ser
GGA
-
¡û
>C241047772
CP039219
Gammaproteobacteria
Piscirickettsia salmonis NVI 5692 [CP039219]
2106382
2106292
-
Ser
GGA
-
¡û
>C241047792
CP039227
Gammaproteobacteria
Piscirickettsia salmonis SR1 [CP039227]
1272507
1272597
+
Ser
GGA
-
¡û
>C241047881
CP039234
Gammaproteobacteria
Piscirickettsia salmonis BI1 [CP039234]
2316619
2316529
-
Ser
GGA
-
¡û
>C241047903
CP039240
Gammaproteobacteria
Piscirickettsia salmonis MR5 [CP039240]
1281546
1281636
+
Ser
GGA
-
¡û
>WENV035920
AACY021735972
Marine microbial communities from Global Ocean Sampling (GOS)
502
410
-
Ser
GGA
[ENA]
>C161063136
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
1265897
1265987
+
Ser
GGA
-
¡û
>WENV056836
AACY023268224
Marine microbial communities from Global Ocean Sampling (GOS)
46
136
+
Ser
GGA
[ENA]
>WENV057848
AACY023308581
Marine microbial communities from Global Ocean Sampling (GOS)
541
449
-
Ser
GGA
[ENA]
>W1610599329
LFLB01000038
Gammaproteobacteria
Candidatus Spongiihabitans thiooxidans LS_SOB [LFLB]
37571
37481
-
Ser
GGA
[ENA]
¡û
>W1710720761
LFLB01000038
Gammaproteobacteria
Candidatus Spongiihabitans thiooxidans LS_SOB [LFLB]
37571
37481
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK