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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187986 (62 seq.)
>W1710987347
LPUO01000034
Gammaproteobacteria
Aeromonas schubertii [LPUO]
85279
85203
-
Val
GAC
[ENA]
¡û
>W1711228293
LXWK01000019
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
161419
161343
-
Val
GAC
[ENA]
¡û
>W1711228294
LXWK01000019
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
161276
161200
-
Val
GAC
[ENA]
¡û
>W1711233504
LYBX01000003
Gammaproteobacteria
Providencia rettgeri [LYBX]
3270
3346
+
Val
GAC
[ENA]
¡û
>W1711233545
LYBX01000009
Gammaproteobacteria
Providencia rettgeri [LYBX]
177316
177240
-
Val
GAC
[ENA]
¡û
>W1711487167
MKFU01000001
Gammaproteobacteria
Aeromonas sobria [MKFU]
50766
50842
+
Val
GAC
[ENA]
¡û
>C171065781
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2132427
2132351
-
Val
GAC
-
¡û
>C171065782
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2132318
2132242
-
Val
GAC
-
¡û
>C171065783
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2132209
2132133
-
Val
GAC
-
¡û
>WENV181414333
OGCL01000229
[OGCL] hot springs metagenome; Hot spring water
7810
7886
+
Val
GAC
[ENA]
¢þ
>W141283308
JALB01000014
Gammaproteobacteria
Providencia alcalifaciens RIMD 1656011 [JALB]
43385
43461
+
Val
GAC
[ENA]
¡û
>C181090967
CP023817
Gammaproteobacteria
Aeromonas sp. CU5 [CP023817]
1719046
1719122
+
Val
GAC
-
¡û
>C191129070
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2073878
2073954
+
Val
GAC
-
¡û
>C191170479
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
2201584
2201660
+
Val
GAC
-
¡û
>W141779398
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
484527
484603
+
Val
GAC
[ENA]
¡û
>W141779399
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
484629
484705
+
Val
GAC
[ENA]
¡û
>W1910620001
LJZX01000056
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
13898
13822
-
Val
GAC
[ENA]
¡û
>W1911178625
NQML01000027
Gammaproteobacteria
Aeromonas sobria TM12 [NQML]
20954
20878
-
Val
GAC
[ENA]
¡û
>W1911178729
NQMM01000026
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
3764
3840
+
Val
GAC
[ENA]
¡û
>W1911584717
PIPJ01000002
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
57938
58014
+
Val
GAC
[ENA]
¡û
>W1911585042
PIPP01000001
Gammaproteobacteria
Aliidiomarina shirensis AIS [PIPP]
498988
498912
-
Val
GAC
[ENA]
¡û
>W1911585089
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
806070
806146
+
Val
GAC
[ENA]
¡û
>W1911585476
PIPY01000004
Gammaproteobacteria
Pseudidiomarina insulisalsae CVS-6 [PIPY]
191792
191716
-
Val
GAC
[ENA]
¡û
>W1810533639
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
1049002
1048926
-
Val
GAC
[ENA]
¡û
>W1810533640
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
1048905
1048829
-
Val
GAC
[ENA]
¡û
>W1810533641
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
1048808
1048732
-
Val
GAC
[ENA]
¡û
>W1810534280
QCZZ01000001
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
353321
353397
+
Val
GAC
[ENA]
¡û
>W1810534281
QCZZ01000001
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
353419
353495
+
Val
GAC
[ENA]
¡û
>W1810534282
QCZZ01000001
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
353517
353593
+
Val
GAC
[ENA]
¡û
>W1810534283
QCZZ01000001
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
353615
353691
+
Val
GAC
[ENA]
¡û
>WENV031269
AACY021352417
Marine microbial communities from Global Ocean Sampling (GOS)
175
97
-
Val
GAC
[ENA]
>W1510065994
CDBW01000044
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
71222
71298
+
Val
GAC
[ENA]
¡û
>W1510066084
CDBY01000057
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
26403
26479
+
Val
GAC
[ENA]
¡û
>W1510066549
CDCE01000034
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
69174
69098
-
Val
GAC
[ENA]
¡û
>W1510756805
JACP01000021
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
85037
85113
+
Val
GAC
[ENA]
¡û
>W1510756806
JACP01000021
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
85134
85210
+
Val
GAC
[ENA]
¡û
>W1510756807
JACP01000021
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
85231
85307
+
Val
GAC
[ENA]
¡û
>W1510756808
JACP01000021
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
85328
85404
+
Val
GAC
[ENA]
¡û
>W1510756809
JACP01000021
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
85425
85501
+
Val
GAC
[ENA]
¡û
>W1510756810
JACP01000021
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
85522
85598
+
Val
GAC
[ENA]
¡û
>W1511365726
JSEQ01000001
Gammaproteobacteria
Providencia rettgeri CCBH11880 [JSEQ]
753140
753216
+
Val
GAC
[ENA]
¡û
>W1511365727
JSEQ01000001
Gammaproteobacteria
Providencia rettgeri CCBH11880 [JSEQ]
753249
753325
+
Val
GAC
[ENA]
¡û
>W1511365728
JSEQ01000001
Gammaproteobacteria
Providencia rettgeri CCBH11880 [JSEQ]
753358
753434
+
Val
GAC
[ENA]
¡û
>W1511393869
JTAU01000001
Gammaproteobacteria
Providencia stuartii FDAARGOS_87 [JTAU]
32072
31996
-
Val
GAC
[ENA]
¡û
>W1511586725
LAZL01000012
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
3462
3386
-
Val
GAC
[ENA]
¡û
>W1511621880
LCVM01000174
Gammaproteobacteria
Providencia rettgeri MR4 [LCVM]
5259
5183
-
Val
GAC
[ENA]
¡û
>WENV052056
AACY023001664
Marine microbial communities from Global Ocean Sampling (GOS)
322
400
+
Val
GAC
[ENA]
>C161058533
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
3148314
3148238
-
Val
GAC
-
¡û
>C161058534
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
3148212
3148136
-
Val
GAC
-
¡û
>C161064787
CP014024
Gammaproteobacteria
Providencia stuartii FDAARGOS_145 [CP014024]
1323065
1323141
+
Val
GAC
-
¡û
>C161064788
CP014024
Gammaproteobacteria
Providencia stuartii FDAARGOS_145 [CP014024]
1323169
1323245
+
Val
GAC
-
¡û
>C161064789
CP014024
Gammaproteobacteria
Providencia stuartii FDAARGOS_145 [CP014024]
1323272
1323348
+
Val
GAC
-
¡û
>W1610461075
FKKY01000017
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
73077
73001
-
Val
GAC
[ENA]
¡û
>W1610461182
FKKY02000017
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
73077
73001
-
Val
GAC
[ENA]
¡û
>W1610575143
JZTI01000053
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
12542
12618
+
Val
GAC
[ENA]
¡û
>W1610842291
LPUO01000034
Gammaproteobacteria
Aeromonas schubertii [LPUO]
85279
85203
-
Val
GAC
[ENA]
¡û
>W1611012210
LXWK01000019
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
161419
161343
-
Val
GAC
[ENA]
¡û
>W1611012211
LXWK01000019
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
161276
161200
-
Val
GAC
[ENA]
¡û
>W1611014057
LYBX01000003
Gammaproteobacteria
Providencia rettgeri [LYBX]
3270
3346
+
Val
GAC
[ENA]
¡û
>W1611014098
LYBX01000009
Gammaproteobacteria
Providencia rettgeri [LYBX]
177316
177240
-
Val
GAC
[ENA]
¡û
>W1710533898
FNRM01000002
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
185633
185709
+
Val
GAC
[ENA]
¡û
>W1710692378
JZTI01000053
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
12542
12618
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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