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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188130 (111 seq.)
>W1711139024
LVEP01000024
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
404
328
-
Arg
TCT
[ENA]
¡û
>W1711139028
LVEP01000028
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
19935
20011
+
Arg
TCT
[ENA]
¡û
>W1711146809
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
476506
476582
+
Arg
TCT
[ENA]
¡û
>W1711712519
MTCA01000034
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
12246
12170
-
Arg
TCT
[ENA]
¡û
>W1711966550
NCWQ01000043
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
1791
1717
-
Arg
TCT
[ENA]
¡û
>W1711966551
NCWQ01000043
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
1641
1567
-
Arg
TCT
[ENA]
¡û
>C171066016
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
1533569
1533645
+
Arg
TCT
-
¡û
>C171066033
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
2322788
2322712
-
Arg
TCT
-
¡û
>W131225370
AUDN01000007
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
231051
231125
+
Arg
TCT
[ENA]
¡û
>W131225410
AUDO01000001
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
21462
21388
-
Arg
TCT
[ENA]
¡û
>W131225417
AUDO01000007
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
114129
114055
-
Arg
TCT
[ENA]
¡û
>W131229162
AUGO01000009
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
71866
71790
-
Arg
TCT
[ENA]
¡û
>W141023458
AJXL01000023
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
2536
2610
+
Arg
TCT
[ENA]
¡û
>WENV180285725
OBID01651990
[OBID] metagenome; sludge
34
108
+
Arg
TCT
[ENA]
¡û
>WENV180593852
OCOY01000665
[OCOY] marine metagenome; ENVO:00002010
2739
2813
+
Arg
TCT
[ENA]
¡û
>WENV181324569
OFLF01003122
[OFLF] marine metagenome; melt pond
85
11
-
Arg
TCT
[ENA]
¡û
>WENV181383983
OFRH01003841
[OFRH] wastewater metagenome; Exp Tend NO 100WW
232
158
-
Arg
TCT
[ENA]
¡û
>WENV183621128
OOFT01007668
[OOFT] marine metagenome; sea ice
1005
1079
+
Arg
TCT
[ENA]
¡û
>WENV170559351
CXWL01120152
[CXWL] groundwater metagenome; biofilm material
804
730
-
Arg
TCT
[ENA]
¡û
>C181047432
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
3851935
3851861
-
Arg
TCT
-
¡û
>W141820226
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
3231662
3231586
-
Arg
TCT
[ENA]
¡û
>W1910808960
MUGT01000149
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
3879
3805
-
Arg
TCT
[ENA]
¡û
>W1911564271
PCMW01000021
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
7771
7845
+
Arg
TCT
[ENA]
¡û
>W1810365421
PVUB01000001
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
38756
38682
-
Arg
TCT
[ENA]
¡û
>W1810533241
QCZH01000010
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
27593
27667
+
Arg
TCT
[ENA]
¡û
>W1810533242
QCZH01000010
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
27779
27853
+
Arg
TCT
[ENA]
¡û
>W1810533304
QCZI01000017
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
9585
9659
+
Arg
TCT
[ENA]
¡û
>W1810722604
QNUX01000008
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
112303
112377
+
Arg
TCT
[ENA]
¡û
>W1810723026
QNVY01000002
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
169676
169750
+
Arg
TCT
[ENA]
¡û
>W1810763381
QQBA01000018
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
46970
46896
-
Arg
TCT
[ENA]
¡û
>W2010102762
BJXD01000083
Bacteroidota
Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 [BJXD]
11389
11315
-
Arg
TCT
[ENA]
¡û
>W2010613131
JABSNK010000011
Bacteroidota
Flavobacterium sp. 28A [JABSNK]
10472
10546
+
Arg
TCT
[ENA]
¡û
>W2010613136
JABSNK010000021
Bacteroidota
Flavobacterium sp. 28A [JABSNK]
642
568
-
Arg
TCT
[ENA]
¡û
>W2010913823
MUGT01000149
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
3879
3805
-
Arg
TCT
[ENA]
¡û
>W2011176651
PCMW01000021
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
7771
7845
+
Arg
TCT
[ENA]
¡û
>W2011375182
RBKZ01000001
Bacteroidota
Flavobacterium sp. 120 [RBKZ]
1352222
1352296
+
Arg
TCT
[ENA]
¡û
>W2011388679
RBXA01000002
Bacteroidota
Flavobacterium limicola DSM 15094 [RBXA]
130726
130800
+
Arg
TCT
[ENA]
¡û
>W2011388871
RBXD01000001
Bacteroidota
Flavobacterium sp. 123 [RBXD]
59792
59718
-
Arg
TCT
[ENA]
¡û
>W2011481133
RQVR01000003
Bacteroidota
Flavobacterium sp. YIM 102600 [RQVR]
52920
52994
+
Arg
TCT
[ENA]
¡û
>W2011504701
RYDF01000007
Bacteroidota
Flavobacterium sp. GSN2 [RYDF]
116600
116526
-
Arg
TCT
[ENA]
¡û
>W2011504777
RYDG01000006
Bacteroidota
Flavobacterium sp. LB2P53 [RYDG]
137189
137115
-
Arg
TCT
[ENA]
¡û
>W2011504817
RYDH01000006
Bacteroidota
Flavobacterium sp. LS1R10 [RYDH]
114884
114810
-
Arg
TCT
[ENA]
¡û
>W2011504843
RYDI01000007
Bacteroidota
Flavobacterium sp. LS1P28 [RYDI]
115191
115117
-
Arg
TCT
[ENA]
¡û
>W2011504890
RYDJ01000007
Bacteroidota
Flavobacterium sp. RB1N8 [RYDJ]
35181
35255
+
Arg
TCT
[ENA]
¡û
>W2011504960
RYDL01000003
Bacteroidota
Flavobacterium sp. RSP15 [RYDL]
46006
45932
-
Arg
TCT
[ENA]
¡û
>W2011505011
RYDM01000003
Bacteroidota
Flavobacterium sp. RSP46 [RYDM]
116743
116669
-
Arg
TCT
[ENA]
¡û
>W2011505066
RYDN01000048
Bacteroidota
Flavobacterium sp. RSP49 [RYDN]
3704
3630
-
Arg
TCT
[ENA]
¡û
>W2011505087
RYDO01000003
Bacteroidota
Flavobacterium sp. GSP6 [RYDO]
365806
365880
+
Arg
TCT
[ENA]
¡û
>W2011505121
RYDP01000005
Bacteroidota
Flavobacterium sp. GSP27 [RYDP]
126668
126742
+
Arg
TCT
[ENA]
¡û
>W2011633198
SMFK01000005
Bacteroidota
Flavobacterium sp. AR-3-4 [SMFK]
257185
257259
+
Arg
TCT
[ENA]
¡û
>W2011633272
SMFM01000002
Bacteroidota
Flavobacterium sp. AT-3-2 [SMFM]
58850
58776
-
Arg
TCT
[ENA]
¡û
>W2011633319
SMFN01000014
Bacteroidota
Flavobacterium sp. LB-D12 [SMFN]
87829
87755
-
Arg
TCT
[ENA]
¡û
>W2011633375
SMFO01000016
Bacteroidota
Flavobacterium sp. TSA-D2 [SMFO]
1105
1031
-
Arg
TCT
[ENA]
¡û
>W2011637059
SMLF01000006
Bacteroidota
Flavobacterium sp. GT3P67 [SMLF]
74181
74107
-
Arg
TCT
[ENA]
¡û
>W2011637089
SMLG01000004
Bacteroidota
Flavobacterium sp. LB3P52 [SMLG]
216150
216224
+
Arg
TCT
[ENA]
¡û
>W2011637141
SMLH01000007
Bacteroidota
Flavobacterium sp. LB2P22 [SMLH]
103426
103500
+
Arg
TCT
[ENA]
¡û
>W2012021591
VFPJ01000001
Bacteroidota
Flavobacterium branchiophilum DSM 24789 [VFPJ]
2972541
2972615
+
Arg
TCT
[ENA]
¡û
>W2012031799
VHLM01000032
Bacteroidota
Flavobacterium sp. I-STPP5a [VHLM]
30858
30784
-
Arg
TCT
[ENA]
¡û
>W2012031882
VHLN01000122
Bacteroidota
Flavobacterium sp. I-STPA6A [VHLN]
30867
30793
-
Arg
TCT
[ENA]
¡û
>W2012066233
VJZL01000016
Bacteroidota
Flavobacterium sp. GSR22 [VJZL]
47723
47649
-
Arg
TCT
[ENA]
¡û
>W2012066279
VJZM01000018
Bacteroidota
Flavobacterium sp. GSR18 [VJZM]
33750
33824
+
Arg
TCT
[ENA]
¡û
>W2012066320
VJZN01000019
Bacteroidota
Flavobacterium sp. GSP39 [VJZN]
33750
33824
+
Arg
TCT
[ENA]
¡û
>W2012066356
VJZO01000016
Bacteroidota
Flavobacterium sp. GSP21 [VJZO]
47723
47649
-
Arg
TCT
[ENA]
¡û
>W2012066397
VJZP01000015
Bacteroidota
Flavobacterium sp. GSP16 [VJZP]
33752
33826
+
Arg
TCT
[ENA]
¡û
>W2012066430
VJZQ01000005
Bacteroidota
Flavobacterium sp. LB3P62 [VJZQ]
89594
89520
-
Arg
TCT
[ENA]
¡û
>W2012066474
VJZR01000003
Bacteroidota
Flavobacterium sp. LB3P56 [VJZR]
320344
320418
+
Arg
TCT
[ENA]
¡û
>W2012066522
VJZS01000010
Bacteroidota
Flavobacterium sp. ZT3R18 [VJZS]
42880
42954
+
Arg
TCT
[ENA]
¡û
>W2012066523
VJZS01000010
Bacteroidota
Flavobacterium sp. ZT3R18 [VJZS]
42967
43041
+
Arg
TCT
[ENA]
¡û
>W2012066524
VJZS01000010
Bacteroidota
Flavobacterium sp. ZT3R18 [VJZS]
43174
43248
+
Arg
TCT
[ENA]
¡û
>W2012066561
VJZT01000004
Bacteroidota
Flavobacterium sp. LB1R34 [VJZT]
141562
141488
-
Arg
TCT
[ENA]
¡û
>W2012081628
VLKO01000007
Bacteroidota
Flavobacterium tiangeerense CGMCC 1.6847 [VLKO]
96418
96344
-
Arg
TCT
[ENA]
¡û
>W2012082086
VLKX01000018
Bacteroidota
Flavobacterium glaciei CGMCC 1.5380 [VLKX]
46970
46896
-
Arg
TCT
[ENA]
¡û
>W2012102766
VOGZ02000005
Bacteroidota
Flavobacterium sp. XN-5 [VOGZ]
236606
236532
-
Arg
TCT
[ENA]
¡û
>W2110248880
JACRUI010000005
Bacteroidota
Flavobacterium kayseriense F-47 [JACRUI]
195246
195172
-
Arg
TCT
[ENA]
¡û
>W2110248923
JACRUJ010000005
Bacteroidota
Flavobacterium kayseriense F-380 [JACRUJ]
196311
196237
-
Arg
TCT
[ENA]
¡û
>W2110248954
JACRUK010000014
Bacteroidota
Flavobacterium muglaense F-60 [JACRUK]
2600
2674
+
Arg
TCT
[ENA]
¡û
>W2110248999
JACRUL010000015
Bacteroidota
Flavobacterium muglaense F-392 [JACRUL]
77646
77572
-
Arg
TCT
[ENA]
¡û
>W2110363470
JADOVC010000009
Bacteroidota
Flavobacterium sp. CG_9.1 [JADOVC]
21663
21589
-
Arg
TCT
[ENA]
¡û
>W2110363521
JADOVD010000017
Bacteroidota
Flavobacterium sp. CG_9.10 [JADOVD]
4948
4874
-
Arg
TCT
[ENA]
¡û
>W2110532816
JAGFBU010000004
Bacteroidota
Flavobacterium sp. P4023 [JAGFBU]
81600
81674
+
Arg
TCT
[ENA]
¡û
>W2110541253
JAGGNA010000001
Bacteroidota
Flavobacterium sp. CG_23.5 [JAGGNA]
827831
827757
-
Arg
TCT
[ENA]
¡û
>C201225270
CP049329
Bacteroidota
Flavobacterium sp. Sr18 [CP049329]
595551
595477
-
Arg
TCT
-
¡û
>C231077228
CP056783
Bacteroidota
Flavobacterium sp. K5-23 [CP056783]
3039852
3039778
-
Arg
TCT
-
¡û
>C231235333
CP087135
Bacteroidota
Flavobacterium sp. F-340 [CP087135]
2988536
2988462
-
Arg
TCT
-
¡û
>W2110750776
MQTN01000002
Bacteroidota
Flavobacterium sp. PL002 PL0002 [MQTN]
2481
2407
-
Arg
TCT
[ENA]
¡û
>W2110750784
MQTN01000012
Bacteroidota
Flavobacterium sp. PL002 PL0002 [MQTN]
9837
9911
+
Arg
TCT
[ENA]
¡û
>C231553988
CP113948
Bacteroidota
Flavobacterium sp. IMCC34515 [CP113948]
1435715
1435641
-
Arg
TCT
-
¡û
>C231558531
CP114289
Bacteroidota
Flavobacterium sp. IMCC36791 [CP114289]
1952499
1952425
-
Arg
TCT
-
¡û
>C231563086
CP114882
Bacteroidota
Flavobacterium sp. IMCC36792 [CP114882]
2390393
2390467
+
Arg
TCT
-
¡û
>C231652927
OU957226
Bacteroidota
Flavobacterium sp. CECT 9288 [OU957226, OU957227]
1103813
1103887
+
Arg
TCT
-
¡û
>W1511390933
JSYM01000002
Bacteroidota
Flavobacterium sp. AED [JSYM]
465562
465636
+
Arg
TCT
[ENA]
¡û
>W1511391008
JSYO01000011
Bacteroidota
Flavobacterium sp. JRM [JSYO]
74365
74291
-
Arg
TCT
[ENA]
¡û
>W1511391009
JSYO01000011
Bacteroidota
Flavobacterium sp. JRM [JSYO]
74174
74098
-
Arg
TCT
[ENA]
¡û
>W1511391086
JSYP01000007
Bacteroidota
Flavobacterium sp. KMS [JSYP]
114194
114120
-
Arg
TCT
[ENA]
¡û
>W1511391087
JSYP01000007
Bacteroidota
Flavobacterium sp. KMS [JSYP]
114003
113927
-
Arg
TCT
[ENA]
¡û
>C121017009
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1500487
1500563
+
Arg
TCT
[Ensembl]
¡û
>W1610950032
LVEP01000024
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
404
328
-
Arg
TCT
[ENA]
¡û
>W1610950036
LVEP01000028
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
19935
20011
+
Arg
TCT
[ENA]
¡û
>W1610957706
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
476506
476582
+
Arg
TCT
[ENA]
¡û
>W1710528018
FNMV01000002
Bacteroidota
Flavobacterium degerlachei [FNMV]
1414
1338
-
Arg
TCT
[ENA]
¡û
>W1710533475
FNRD01000003
Bacteroidota
Flavobacterium gillisiae [FNRD]
262003
261927
-
Arg
TCT
[ENA]
¡û
>W1710539689
FNVP01000008
Bacteroidota
Flavobacterium urumqiense [FNVP]
48620
48694
+
Arg
TCT
[ENA]
¡û
>W1710551329
FOFZ01000003
Bacteroidota
Flavobacterium frigoris [FOFZ]
242042
241968
-
Arg
TCT
[ENA]
¡û
>W1710560760
FONQ01000006
Bacteroidota
Flavobacterium xueshanense [FONQ]
88540
88616
+
Arg
TCT
[ENA]
¡û
>W1710585074
FQWB01000005
Bacteroidota
Flavobacterium fluvii [FQWB]
188901
188827
-
Arg
TCT
[ENA]
¡û
>W1710585193
FQWE01000001
Bacteroidota
Flavobacterium segetis [FQWE]
5579
5505
-
Arg
TCT
[ENA]
¡û
>W1710585233
FQWF01000004
Bacteroidota
Flavobacterium micromati [FQWF]
23350
23426
+
Arg
TCT
[ENA]
¡û
>W1710585705
FQWO01000001
Bacteroidota
Flavobacterium granuli [FQWO]
38756
38682
-
Arg
TCT
[ENA]
¡û
>W1710591580
FRBU01000081
Bacteroidota
Flavobacterium xanthum [FRBU]
664
590
-
Arg
TCT
[ENA]
¡û
>W1710592438
FRCL01000018
Bacteroidota
Flavobacterium xinjiangense [FRCL]
2810
2886
+
Arg
TCT
[ENA]
¡û
>W1710593391
FRDK01000002
Bacteroidota
Flavobacterium fryxellicola [FRDK]
91658
91582
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK