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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188146 (27 seq.)
>WENV180028147
FTJA01000163
[FTJA] metagenome; soil
6447
6373
-
Pro
GGG
[ENA]
¡û
>WENV183092767
OLLK01000283
[OLLK] soil metagenome; soil
36887
36961
+
Pro
GGG
[ENA]
¡û
>WENV170020636
BBPE01015544
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
487
563
+
Pro
GGG
[ENA]
¡û
>C181001402
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
6020766
6020692
-
Pro
GGG
-
¡û
>C181071974
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
476923
476997
+
Pro
GGG
-
¡û
>W2010695176
JACHBY010000004
Bacteroidota
Mucilaginibacter sp. X5P1 [JACHBY]
70766
70692
-
Pro
GGG
[ENA]
¡û
>W2010696247
JACHCR010000003
Bacteroidota
Mucilaginibacter sp. FT3.2 [JACHCR]
375008
375082
+
Pro
GGG
[ENA]
¡û
>W2010715790
JACHWX010000002
Bacteroidota
Mucilaginibacter gotjawali CECT 8628 [JACHWX]
418574
418648
+
Pro
GGG
[ENA]
¡û
>W2011374910
RBKU01000001
Bacteroidota
Mucilaginibacter gracilis DSM 18602 [RBKU]
1252323
1252397
+
Pro
GGG
[ENA]
¡û
>W2011521991
SACK01000002
Bacteroidota
Mucilaginibacter sp. YBJ-36 [SACK]
93348
93274
-
Pro
GGG
[ENA]
¡û
>W2011531634
SBIW01000004
Bacteroidota
Mucilaginibacter sp. F01003 [SBIW]
62841
62767
-
Pro
GGG
[ENA]
¡û
>W2011557866
SEWG01000005
Bacteroidota
Mucilaginibacter sp. 17JY9-4 [SEWG]
173394
173468
+
Pro
GGG
[ENA]
¡û
>W2011666604
SOZE01000002
Bacteroidota
Mucilaginibacter psychrotolerans NH7-4 [SOZE]
246066
246140
+
Pro
GGG
[ENA]
¡û
>W2011689859
SSHJ01000018
Bacteroidota
Pedobacter ureilyticus THG-T11 [SSHJ]
83443
83369
-
Pro
GGG
[ENA]
¡û
>W2012082666
VLLI01000002
Bacteroidota
Mucilaginibacter frigoritolerans ATCC BAA-1854 [VLLI]
353392
353466
+
Pro
GGG
[ENA]
¡û
>W2012412098
WPIL01000003
Bacteroidota
Mucilaginibacter sp. HMF7856 [WPIL]
142688
142764
+
Pro
GGG
[ENA]
¡û
>W2110281325
JACWMY010000003
Bacteroidota
Mucilaginibacter pankratovii ZT4R22 [JACWMY]
149535
149461
-
Pro
GGG
[ENA]
¡û
>W2110314649
JADFBY010000003
Bacteroidota
Mucilaginibacter sp. JRF [JADFBY]
390005
389931
-
Pro
GGG
[ENA]
¡û
>C201276324
CP054139
Bacteroidota
Mucilaginibacter sp. G2-14 [CP054139]
4538727
4538653
-
Pro
GGG
-
¡û
>C211195911
CP064939
Bacteroidota
Pedobacter sp. JBR3-12 [CP064939]
5144998
5144924
-
Pro
GGG
-
¡û
>C211232074
CP066775
Bacteroidota
Mucilaginibacter ginkgonis HMF7856 [CP066775]
3140500
3140576
+
Pro
GGG
-
¡û
>C231603226
CP117883
Bacteroidota
Mucilaginibacter sp. KACC 22773 [CP117883]
7039739
7039665
-
Pro
GGG
-
¡û
>C241066135
CP042436
Bacteroidota
Mucilaginibacter ginsenosidivorans Gsoil 3017 [CP042436]
738583
738509
-
Pro
GGG
-
¡û
>C241066145
CP042437
Bacteroidota
Mucilaginibacter ginsenosidivorax KHI28 [CP042437]
3115480
3115554
+
Pro
GGG
-
¡û
>W11138410
AEIH01000137
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
81940
82014
+
Pro
GGG
[ENA]
¡û
>W1710548298
FODR01000001
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
41798
41872
+
Pro
GGG
[ENA]
¡û
>W1710592457
FRCM01000003
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
671566
671640
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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