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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188443 (24 seq.)
>A171000166
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1787545
1787469
-
Thr
GGT
-
¡û
>A171000167
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1783213
1783137
-
Thr
GGT
-
¡û
>A171001688
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
993133
993209
+
Thr
GGT
-
¡û
>A17A000757
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1282355
1282450
+
Thr
GGT
-
¡û
>A17A000805
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
812674
812767
+
Thr
GGT
-
¡û
>A179000032
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1495532
1495623
+
Thr
GGT
-
¡û
>A179000312
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1282355
1282450
+
Thr
GGT
-
¡û
>A179000346
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
812674
812766
+
Thr
GGT
-
¡û
>A179000703
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1565939
1566030
+
Thr
GGT
-
¡û
>A172000056
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1565939
1566031
+
Thr
GGT
-
¡û
>WENV181228602
OFEH01000394
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
2241
2165
-
Thr
GGT
[ENA]
¢þ
>WENV181229038
OFEJ01000114
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
16509
16433
-
Thr
GGT
[ENA]
¢þ
>WENV181406779
OGCG01001362
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
495
571
+
Thr
GGT
[ENA]
¢þ
>At0228
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1792192
1792081
-
Thr
GGT
[Ensembl]
¡û
>At0260
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1141743
1141651
-
Thr
GGT
[Ensembl]
¡û
>At0296
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1028707
1028799
+
Thr
GGT
[Ensembl]
¡û
>At0352
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
409363
409290
-
Thr
GGT
[Ensembl]
¡û
>W1610000398
AAXQ01000001
Thermoproteota
Caldivirga maquilingensis IC-167 [AAXQ]
1622262
1622338
+
Thr
GGT
[ENA]
¡û
>W1610000399
AAXQ01000001
Thermoproteota
Caldivirga maquilingensis IC-167 [AAXQ]
1626594
1626671
+
Thr
GGT
[ENA]
¡û
>W1610024274
ATWG01000001
Thermoproteota
Stygiolobus azoricus DSM 6296 [ATWG]
1112063
1111987
-
Thr
GGT
[ENA]
¡û
>W1610047653
BBDM01000001
Thermoproteota
Vulcanisaeta sp. JCM 14467 [BBDM]
113840
113916
+
Thr
GGT
[ENA]
¡û
>W1610047709
BBDO01000005
Thermoproteota
Vulcanisaeta sp. JCM 16161 [BBDO]
243123
243199
+
Thr
GGT
[ENA]
¡û
>W1610584537
LCTF01000031
Thermoproteota
Caldivirga sp. MU80 [LCTF]
13044
13120
+
Thr
GGT
[ENA]
¡û
>W1610781297
LOCB01000031
Thermoproteota
Caldivirga sp. MG_3 [LOCB]
13047
13123
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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