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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188449 (115 seq.)
>W1711972391
NDBT01000033
Gammaproteobacteria
Klebsiella pneumoniae [NDBT]
22918
22842
-
Arg
TCT
[ENA]
¡û
>W1711974305
NDCW01000060
Gammaproteobacteria
Klebsiella pneumoniae [NDCW]
240414
240490
+
Arg
TCT
[ENA]
¡û
>W1711974445
NDCY01000079
Gammaproteobacteria
Klebsiella pneumoniae [NDCY]
2810
2886
+
Arg
TCT
[ENA]
¡û
>W1711975881
NDDU01000034
Gammaproteobacteria
Klebsiella pneumoniae [NDDU]
2810
2886
+
Arg
TCT
[ENA]
¡û
>W1712019037
NEYI01000030
Gammaproteobacteria
Klebsiella pneumoniae [NEYI]
22918
22842
-
Arg
TCT
[ENA]
¡û
>W1712074214
NGSQ01000001
Gammaproteobacteria
Klebsiella pneumoniae [NGSQ]
1396925
1396849
-
Arg
TCT
[ENA]
¡û
>WENV180228107
OBBW01000071
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
53910
53986
+
Arg
TCT
[ENA]
¡û
>WENV180554012
OCJL01000054
[OCJL] human gut metagenome; Infant 2 DOL 7 gut
4060
4136
+
Arg
TCT
[ENA]
¡û
>WENV180557470
OCJW01000075
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
41974
41898
-
Arg
TCT
[ENA]
¡û
>WENV180558791
OCKA01000019
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
41974
41898
-
Arg
TCT
[ENA]
¡û
>WENV180559134
OCKB01000083
[OCKB] human gut metagenome; Infant 2 DOL 23 gut
38139
38063
-
Arg
TCT
[ENA]
¡û
>WENV180559790
OCKD01000128
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
41974
41898
-
Arg
TCT
[ENA]
¡û
>WENV182400547
OIEQ01000685
[OIEQ] human gut metagenome; human gut
1708
1635
-
Arg
TCT
[ENA]
¡û
>WENV182518425
OIWP01000752
[OIWP] human gut metagenome; faeces
25243
25167
-
Arg
TCT
[ENA]
¡û
>WENV182827851
OKDD01002058
[OKDD] human gut metagenome; human gut
372
296
-
Arg
TCT
[ENA]
¡û
>WENV182837369
OKGG01000003
[OKGG] human gut metagenome; human gut
634
710
+
Arg
TCT
[ENA]
¡û
>WENV182941590
OKVG01003607
[OKVG] human gut metagenome; human gut
3910
3834
-
Arg
TCT
[ENA]
¡û
>WENV183135279
OLOE01000196
[OLOE] human gut metagenome; faeces
6344
6420
+
Arg
TCT
[ENA]
¡û
>WENV183760584
PPYE01233515
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3512
3588
+
Arg
TCT
[ENA]
¡û
>C181061447
CP022273
Gammaproteobacteria
Citrobacter freundii 18-1 [CP022273]
1543088
1543012
-
Arg
TCT
-
¡û
>C181181238
CP029590
Gammaproteobacteria
Klebsiella pneumoniae DA33144 [CP029590]
3578677
3578753
+
Arg
TCT
-
¡û
>C181184516
CP029738
Gammaproteobacteria
Klebsiella pneumoniae AR_0087 [CP029738]
5303736
5303812
+
Arg
TCT
-
¡û
>C181204103
LS399318
Gammaproteobacteria
Klebsiella pneumoniae [LS399318]
4383725
4383801
+
Arg
TCT
-
¡û
>C191138001
CP035276
Gammaproteobacteria
Citrobacter freundii R17 [CP035276]
1630304
1630380
+
Arg
TCT
-
¡û
>C191189410
LR025088
Gammaproteobacteria
Klebsiella pneumoniae [LR025088]
1825616
1825540
-
Arg
TCT
-
¡û
>C191189501
LR025092
Gammaproteobacteria
Klebsiella pneumoniae [LR025092]
2849121
2849045
-
Arg
TCT
-
¡û
>W1910141564
BIFL01000002
Gammaproteobacteria
Klebsiella pneumoniae TUM17823 [BIFL]
28359
28283
-
Arg
TCT
[ENA]
¡û
>W1910450603
FWJO01000003
Gammaproteobacteria
Klebsiella pneumoniae VRES1247 [FWJO]
199219
199143
-
Arg
TCT
[ENA]
¡û
>W1910450671
FWJP01000003
Gammaproteobacteria
Klebsiella pneumoniae VRES1242 [FWJP]
199199
199123
-
Arg
TCT
[ENA]
¡û
>W1910451070
FWJU01000003
Gammaproteobacteria
Klebsiella pneumoniae VRES1253 [FWJU]
199152
199076
-
Arg
TCT
[ENA]
¡û
>W1910451200
FWJW01000003
Gammaproteobacteria
Klebsiella pneumoniae VRES1257 [FWJW]
318916
318992
+
Arg
TCT
[ENA]
¡û
>W1910454190
FWLJ01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0254 [FWLJ]
309639
309715
+
Arg
TCT
[ENA]
¡û
>W1910454509
FWLN01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0292 [FWLN]
958484
958408
-
Arg
TCT
[ENA]
¡û
>W1910457606
FWNB01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0388 [FWNB]
295158
295234
+
Arg
TCT
[ENA]
¡û
>W1910458456
FWNM01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0196 [FWNM]
1563142
1563066
-
Arg
TCT
[ENA]
¡û
>W1910461144
FWOV01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0291 [FWOV]
514988
515064
+
Arg
TCT
[ENA]
¡û
>W1910486477
FXNM01000004
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864744 [FXNM]
24104
24028
-
Arg
TCT
[ENA]
¡û
>W1910488475
FXOO01000004
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864949 [FXOO]
23234
23158
-
Arg
TCT
[ENA]
¡û
>W1910496195
FXSR01000006
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864827 [FXSR]
42752
42676
-
Arg
TCT
[ENA]
¡û
>W1910861965
NCMG01000025
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn27 [NCMG]
102570
102646
+
Arg
TCT
[ENA]
¡û
>W1910864021
NCNI01000055
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn56 [NCNI]
8618
8694
+
Arg
TCT
[ENA]
¡û
>W1910865773
NCOG01000002
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn80 [NCOG]
113520
113444
-
Arg
TCT
[ENA]
¡û
>W1910866683
NCOT01000023
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn93 [NCOT]
2431
2507
+
Arg
TCT
[ENA]
¡û
>W1910882111
NEFB01000005
Gammaproteobacteria
Citrobacter freundii 181 [NEFB]
164229
164305
+
Arg
TCT
[ENA]
¡û
>W1910918157
NIAU01000250
Gammaproteobacteria
Klebsiella pneumoniae A5 [NIAU]
25926
25850
-
Arg
TCT
[ENA]
¡û
>W1910919688
NICE01000030
Gammaproteobacteria
Klebsiella pneumoniae AUH-KIMP180 [NICE]
846
770
-
Arg
TCT
[ENA]
¡û
>W1910999309
NLDH01000062
Gammaproteobacteria
Klebsiella pneumoniae L201 [NLDH]
3278
3202
-
Arg
TCT
[ENA]
¡û
>W1910999841
NLDO01000065
Gammaproteobacteria
Klebsiella pneumoniae L299 [NLDO]
3278
3202
-
Arg
TCT
[ENA]
¡û
>W1911163518
NPZS01000019
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae KPCRETH20 [NPZS]
72110
72034
-
Arg
TCT
[ENA]
¡û
>W1911246927
NSKY01000033
Gammaproteobacteria
Klebsiella pneumoniae SC633656 [NSKY]
27376
27300
-
Arg
TCT
[ENA]
¡û
>W1911248048
NSMB01000001
Gammaproteobacteria
Klebsiella pneumoniae WBB417 [NSMB]
199443
199519
+
Arg
TCT
[ENA]
¡û
>W1911425370
NXHL01000006
Gammaproteobacteria
Klebsiella pneumoniae 155 [NXHL]
23343
23267
-
Arg
TCT
[ENA]
¡û
>W1911427308
NXIV01000012
Gammaproteobacteria
Klebsiella pneumoniae ST-1414:K058 [NXIV]
25961
25885
-
Arg
TCT
[ENA]
¡û
>W1911669178
QFMJ01000054
Gammaproteobacteria
Klebsiella pneumoniae DZ2-13B1 [QFMJ]
38116
38040
-
Arg
TCT
[ENA]
¡û
>W1810060279
PDLW01000009
Gammaproteobacteria
Klebsiella pneumoniae LBMM1300 [PDLW]
97347
97423
+
Arg
TCT
[ENA]
¡û
>W1810119261
PHRI01000020
Gammaproteobacteria
Klebsiella pneumoniae K5 [PHRI]
27065
26989
-
Arg
TCT
[ENA]
¡û
>W1810119582
PHRM01000020
Gammaproteobacteria
Klebsiella pneumoniae K19 [PHRM]
61780
61856
+
Arg
TCT
[ENA]
¡û
>W1810119632
PHRN01000006
Gammaproteobacteria
Klebsiella pneumoniae K18 [PHRN]
301094
301170
+
Arg
TCT
[ENA]
¡û
>W1810131449
PICO01000217
Gammaproteobacteria
Klebsiella pneumoniae C20 [PICO]
173
97
-
Arg
TCT
[ENA]
¡û
>W1810131502
PICO01001963
Gammaproteobacteria
Klebsiella pneumoniae C20 [PICO]
592
668
+
Arg
TCT
[ENA]
¡û
>W1810132475
PIDC01000007
Gammaproteobacteria
Klebsiella pneumoniae C30 [PIDC]
22226
22150
-
Arg
TCT
[ENA]
¡û
>W1810263655
PQUC01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae DG7168 [PQUC]
388979
388903
-
Arg
TCT
[ENA]
¡û
>W1810264061
PQUH01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae DG6682 [PQUH]
388979
388903
-
Arg
TCT
[ENA]
¡û
>W1810265031
PQUT01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae DG5585 [PQUT]
388979
388903
-
Arg
TCT
[ENA]
¡û
>W1810265193
PQUV01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae DG5563 [PQUV]
388979
388903
-
Arg
TCT
[ENA]
¡û
>W1810265355
PQUX01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae DG5559 [PQUX]
389070
388994
-
Arg
TCT
[ENA]
¡û
>W1810265679
PQVB01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae DG5544 [PQVB]
388979
388903
-
Arg
TCT
[ENA]
¡û
>W1810275946
PSSJ01000001
Gammaproteobacteria
Escherichia sp. R17 [PSSJ]
121029
121105
+
Arg
TCT
[ENA]
¡û
>W1810292742
PTGX01000068
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 1606/2554 [PTGX]
1790
1714
-
Arg
TCT
[ENA]
¡û
>W1810295624
PTIQ01000092
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 2116/3150 [PTIQ]
129757
129833
+
Arg
TCT
[ENA]
¡û
>W1810382421
PXLO01000060
Gammaproteobacteria
Klebsiella pneumoniae CRE08 [PXLO]
1164
1240
+
Arg
TCT
[ENA]
¡û
>W1810493267
QBDU01000004
Gammaproteobacteria
Klebsiella pneumoniae NDM1/OXA48 [QBDU]
26653
26577
-
Arg
TCT
[ENA]
¡û
>W1810636562
QIVH01000003
Gammaproteobacteria
Klebsiella pneumoniae WUSM_KP_93 [QIVH]
295872
295945
+
Arg
TCT
[ENA]
¡û
>W1810637237
QIVR01000004
Gammaproteobacteria
Klebsiella pneumoniae WUSM_KP_83 [QIVR]
310376
310452
+
Arg
TCT
[ENA]
¡û
>W1810637806
QIVZ01000045
Gammaproteobacteria
Klebsiella pneumoniae WUSM_KP_75 [QIVZ]
6069
5993
-
Arg
TCT
[ENA]
¡û
>W1810638150
QIWE01000089
Gammaproteobacteria
Klebsiella pneumoniae WUSM_KP_70 [QIWE]
58
134
+
Arg
TCT
[ENA]
¡û
>W1810706532
QMKE01000001
Gammaproteobacteria
Klebsiella pneumoniae JZX2124 [QMKE]
436472
436396
-
Arg
TCT
[ENA]
¡û
>W2010517153
JAAMQG010000001
Gammaproteobacteria
Citrobacter freundii YDC876 [JAAMQG]
1939770
1939846
+
Arg
TCT
[ENA]
¡û
>W2010950349
NEFB01000005
Gammaproteobacteria
Citrobacter freundii 181 [NEFB]
164229
164305
+
Arg
TCT
[ENA]
¡û
>W2011704474
SWGW01000036
Gammaproteobacteria
Citrobacter portucalensis C1-154 [SWGW]
25477
25401
-
Arg
TCT
[ENA]
¡û
>W2011755175
SZWZ01000109
Gammaproteobacteria
Citrobacter sp. wls714 [SZWZ]
1849
1773
-
Arg
TCT
[ENA]
¡û
>W2011849448
UIDU01000001
Gammaproteobacteria
Klebsiella variicola [UIDU]
502090
502014
-
Arg
TCT
[ENA]
¡û
>W2011849951
UIFG01000005
Gammaproteobacteria
Klebsiella variicola [UIFG]
45425
45349
-
Arg
TCT
[ENA]
¡û
>W2011855486
UKAG01000005
Gammaproteobacteria
Klebsiella variicola EuSCAPE_HR006 [UKAG]
53163
53087
-
Arg
TCT
[ENA]
¡û
>W2011861141
UODE01000019
Gammaproteobacteria
Klebsiella variicola 2485STDY5477978 [UODE]
3515
3591
+
Arg
TCT
[ENA]
¡û
>W2012350861
WJHX01000114
Gammaproteobacteria
Klebsiella quasipneumoniae KP2014c46 [WJHX]
25592
25516
-
Arg
TCT
[ENA]
¡û
>W1510032046
CCEX01000024
Gammaproteobacteria
Klebsiella pneumoniae [CCEX]
23084
23008
-
Arg
TCT
[ENA]
¡û
>W1510035389
CCGQ01000008
Gammaproteobacteria
Klebsiella pneumoniae [CCGQ]
4189
4265
+
Arg
TCT
[ENA]
¡û
>C231106358
CP066143
Gammaproteobacteria
Klebsiella pneumoniae U-0608239 [CP066143]
2546826
2546750
-
Arg
TCT
-
¡û
>C231649013
CP122461
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae IITJ_U23 [CP122461]
1909002
1909078
+
Arg
TCT
-
¡û
>W1511375447
JSNE01000082
Gammaproteobacteria
Escherichia coli upec-146 [JSNE]
5974
5898
-
Arg
TCT
[ENA]
¡û
>W1511434510
JUHZ01000055
Gammaproteobacteria
Klebsiella aerogenes ND17 [JUHZ]
2278
2354
+
Arg
TCT
[ENA]
¡û
>W1511440201
JUOV01000814
Gammaproteobacteria
Klebsiella pneumoniae 898_KPNE [JUOV]
2388
2464
+
Arg
TCT
[ENA]
¡û
>W1511673165
LEZV01000007
Gammaproteobacteria
Klebsiella pneumoniae BWH58 [LEZV]
341004
340928
-
Arg
TCT
[ENA]
¡û
>W1511675933
LFBD01000010
Gammaproteobacteria
Klebsiella pneumoniae BIDMC91 [LFBD]
98567
98491
-
Arg
TCT
[ENA]
¡û
>W1610483716
FLAR01000019
Gammaproteobacteria
Klebsiella pneumoniae k1159 [FLAR]
22905
22829
-
Arg
TCT
[ENA]
¡û
>W1610484005
FLAV01000025
Gammaproteobacteria
Klebsiella pneumoniae k1403 [FLAV]
23366
23290
-
Arg
TCT
[ENA]
¡û
>W1610484736
FLBG01000002
Gammaproteobacteria
Klebsiella pneumoniae k1657 [FLBG]
714649
714725
+
Arg
TCT
[ENA]
¡û
>W1610486551
FLCG01000006
Gammaproteobacteria
Klebsiella pneumoniae k1658 [FLCG]
22905
22829
-
Arg
TCT
[ENA]
¡û
>W1610491021
FLEQ01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLEQ]
23211
23135
-
Arg
TCT
[ENA]
¡û
>W1610492425
FLFJ01000020
Gammaproteobacteria
Klebsiella pneumoniae [FLFJ]
23376
23300
-
Arg
TCT
[ENA]
¡û
>W1610494862
FLGR01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLGR]
215301
215225
-
Arg
TCT
[ENA]
¡û
>W1610496041
FLHH01000023
Gammaproteobacteria
Klebsiella pneumoniae [FLHH]
23667
23591
-
Arg
TCT
[ENA]
¡û
>W1610496081
FLHI01000006
Gammaproteobacteria
Klebsiella pneumoniae [FLHI]
308480
308556
+
Arg
TCT
[ENA]
¡û
>W1610499795
FLJI01000001
Gammaproteobacteria
Klebsiella pneumoniae [FLJI]
5135
5211
+
Arg
TCT
[ENA]
¡û
>W1610512005
FLXB01000003
Gammaproteobacteria
Klebsiella pneumoniae PB242 [FLXB]
365706
365630
-
Arg
TCT
[ENA]
¡û
>W1610641993
LJCD01000007
Gammaproteobacteria
Klebsiella pneumoniae [LJCD]
28527
28451
-
Arg
TCT
[ENA]
¡û
>W1610680174
LKKX01000054
Gammaproteobacteria
Klebsiella sp. AA405 [LKKX]
25736
25660
-
Arg
TCT
[ENA]
¡û
>W1610797517
LOOP01000006
Gammaproteobacteria
Escherichia coli [LOOP]
25280
25204
-
Arg
TCT
[ENA]
¡û
>W1710484491
FLEQ01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLEQ]
23211
23135
-
Arg
TCT
[ENA]
¡û
>W1710485895
FLFJ01000020
Gammaproteobacteria
Klebsiella pneumoniae [FLFJ]
23376
23300
-
Arg
TCT
[ENA]
¡û
>W1710488332
FLGR01000002
Gammaproteobacteria
Klebsiella pneumoniae [FLGR]
215301
215225
-
Arg
TCT
[ENA]
¡û
>W1710489511
FLHH01000023
Gammaproteobacteria
Klebsiella pneumoniae [FLHH]
23667
23591
-
Arg
TCT
[ENA]
¡û
>W1710489551
FLHI01000006
Gammaproteobacteria
Klebsiella pneumoniae [FLHI]
308480
308556
+
Arg
TCT
[ENA]
¡û
>W1710493265
FLJI01000001
Gammaproteobacteria
Klebsiella pneumoniae [FLJI]
5135
5211
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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