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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188620 (75 seq.)
>W1710796534
LJSD01000037
Alphaproteobacteria
Mesorhizobium sp. 1M-11 [LJSD]
79724
79800
+
Pro
TGG
[ENA]
¡û
>W1710864395
LMFV01000034
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
141325
141249
-
Pro
TGG
[ENA]
¡û
>W1710865035
LMGJ01000003
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
241152
241228
+
Pro
TGG
[ENA]
¡û
>W1710914753
LNTU01000012
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
668136
668212
+
Pro
TGG
[ENA]
¡û
>W131219398
ATYO01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
115674
115598
-
Pro
TGG
[ENA]
¡û
>W1711501770
MKRZ01000096
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
9606
9682
+
Pro
TGG
[ENA]
¡û
>W1711505366
MKVL01000009
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
114856
114932
+
Pro
TGG
[ENA]
¡û
>WENV180020382
FTCZ01002510
[FTCZ] metagenome; soil
3502
3578
+
Pro
TGG
[ENA]
¡û
>W141093849
AVBP01000021
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
18062
17986
-
Pro
TGG
[ENA]
¡û
>W141093875
AVBQ01000017
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
202897
202973
+
Pro
TGG
[ENA]
¡û
>WENV181167321
OEIU01019842
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1267
1343
+
Pro
TGG
[ENA]
¡û
>WENV181308249
OFIS01001537
[OFIS] sludge metagenome; sludge
4182
4106
-
Pro
TGG
[ENA]
¡û
>WENV181401788
OFTX01006558
[OFTX] sludge metagenome; sludge
1927
1851
-
Pro
TGG
[ENA]
¡û
>WENV181402346
OFTY01000739
[OFTY] sludge metagenome; sludge
1270
1346
+
Pro
TGG
[ENA]
¡û
>W141242814
CAIU01000007
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
161612
161688
+
Pro
TGG
[ENA]
¡û
>WENV182951578
OKVU01003065
[OKVU] human gut metagenome; human gut
792
716
-
Pro
TGG
[ENA]
¡û
>ENV08000285
ABLY01359300
viral fraction from Arctic Ocean
23
99
+
Pro
TGG
[ENA]
¡û
>ENV08000294
ABLY01589105
viral fraction from Arctic Ocean
6
82
+
Pro
TGG
[ENA]
¡û
>WENV183725009
PJQE01123557
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
251
175
-
Pro
CGG
[ENA]
¡û
>WENV170011586
APMI01075282
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1454
1530
+
Pro
TGG
[ENA]
¡û
>WENV170595800
FUFK011977774
[FUFK] metagenome; unknown
323
247
-
Pro
TGG
[ENA]
¡û
>C191064566
CP029562
Alphaproteobacteria
Mesorhizobium sp. Pch-S [CP029562]
5592927
5592851
-
Pro
TGG
-
¡û
>W1910693396
MDEO01000032
Alphaproteobacteria
Mesorhizobium sp. UASWS1009 [MDEO]
249880
249804
-
Pro
TGG
[ENA]
¡û
>W1911569039
PCQQ01000005
Alphaproteobacteria
Ochrobactrum sp. 721/2009 [PCQQ]
371257
371181
-
Pro
TGG
[ENA]
¡û
>W1911569202
PCQT01000011
Alphaproteobacteria
Ochrobactrum sp. 695/2009 [PCQT]
67005
66929
-
Pro
TGG
[ENA]
¡û
>W1911569219
PCQU01000001
Alphaproteobacteria
Ochrobactrum sp. 689/2009 [PCQU]
1743814
1743890
+
Pro
TGG
[ENA]
¡û
>SRA1000141
SRR001036.40868
Marine Viruses from Arctic Ocean (SRP000129)
23
99
+
Pro
TGG
[SRA]
>W1810177497
PJRO01000006
Alphaproteobacteria
Mesorhizobium loti LU [PJRO]
216072
215996
-
Pro
TGG
[ENA]
¡û
>W1810390369
PXYK01000008
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
52732
52656
-
Pro
TGG
[ENA]
¡û
>W1810390421
PXYL01000004
Alphaproteobacteria
Mesorhizobium soli JCM 19897 [PXYL]
8785
8861
+
Pro
TGG
[ENA]
¡û
>W1810595903
QGGG01000003
Alphaproteobacteria
Pseudaminobacter salicylatoxidans DSM 6986 [QGGG]
30634
30710
+
Pro
TGG
[ENA]
¡û
>W1810889099
QURN01000002
Alphaproteobacteria
Mesorhizobium denitrificans LA-28 [QURN]
79942
80018
+
Pro
TGG
[ENA]
¡û
>W2010386450
FPKQ01000017
Alphaproteobacteria
Mesorhizobium amorphae [FPKQ]
170168
170092
-
Pro
TGG
[ENA]
¡û
>W2010670390
JACCAY010000001
Alphaproteobacteria
Mesorhizobium sp. YL-MPnR-2016 [JACCAY]
842139
842215
+
Pro
TGG
[ENA]
¡û
>W2010715334
JACHWN010000001
Alphaproteobacteria
Mesorhizobium sp. RMAD-H1 [JACHWN]
956736
956812
+
Pro
TGG
[ENA]
¡û
>W2010752134
JACLZJ010000001
Alphaproteobacteria
Ochrobactrum sp. CM-21-5 [JACLZJ]
1153022
1153098
+
Pro
TGG
[ENA]
¡û
>W2010827210
MDEO01000032
Alphaproteobacteria
Mesorhizobium sp. UASWS1009 [MDEO]
249880
249804
-
Pro
TGG
[ENA]
¡û
>W2011181186
PCQQ01000005
Alphaproteobacteria
Ochrobactrum sp. 721/2009 [PCQQ]
371257
371181
-
Pro
TGG
[ENA]
¡û
>W2011181349
PCQT01000011
Alphaproteobacteria
Ochrobactrum sp. 695/2009 [PCQT]
67005
66929
-
Pro
TGG
[ENA]
¡û
>W2011181366
PCQU01000001
Alphaproteobacteria
Ochrobactrum sp. 689/2009 [PCQU]
1743814
1743890
+
Pro
TGG
[ENA]
¡û
>W2011455194
RKST01000038
Alphaproteobacteria
Pseudaminobacter sp. CB3 [RKST]
3984
3908
-
Pro
TGG
[ENA]
¡û
>W2011513545
RZOI01000050
Alphaproteobacteria
Mesorhizobium sp. M4A.F.Ca.ET.020.02.1.1 [RZOI]
5047
5123
+
Pro
TGG
[ENA]
¡û
>W2011513626
RZOJ01000366
Alphaproteobacteria
Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 [RZOJ]
5026
4950
-
Pro
TGG
[ENA]
¡û
>W2011514052
RZOT01000099
Alphaproteobacteria
Mesorhizobium sp. M4A.F.Ca.ET.090.04.2.1 [RZOT]
9348
9272
-
Pro
TGG
[ENA]
¡û
>W2011518259
RZSG01000177
Alphaproteobacteria
Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 [RZSG]
4342
4266
-
Pro
TGG
[ENA]
¡û
>W2011538964
SCNJ01000005
Alphaproteobacteria
Rhizobiales bacterium 3FA27D7 [SCNJ]
76670
76746
+
Pro
TGG
[ENA]
¡û
>W2012024330
VFTH01000009
Alphaproteobacteria
Mesorhizobium sp. B4-1-1 [VFTH]
6658
6734
+
Pro
TGG
[ENA]
¡û
>W2012024411
VFTJ01000002
Alphaproteobacteria
Mesorhizobium sp. B3-1-9 [VFTJ]
275801
275725
-
Pro
TGG
[ENA]
¡û
>W2012024459
VFTK01000005
Alphaproteobacteria
Mesorhizobium sp. B3-1-8 [VFTK]
212597
212521
-
Pro
TGG
[ENA]
¡û
>W2012024534
VFTL01000031
Alphaproteobacteria
Mesorhizobium sp. B3-1-7 [VFTL]
63839
63763
-
Pro
TGG
[ENA]
¡û
>W2012024565
VFTM01000013
Alphaproteobacteria
Mesorhizobium sp. B3-1-6 [VFTM]
165741
165817
+
Pro
TGG
[ENA]
¡û
>W2012024601
VFTN01000004
Alphaproteobacteria
Mesorhizobium sp. B3-1-3 [VFTN]
211940
211864
-
Pro
TGG
[ENA]
¡û
>W2012024919
VFTU01000002
Alphaproteobacteria
Mesorhizobium sp. B2-8-5 [VFTU]
294882
294806
-
Pro
TGG
[ENA]
¡û
>W2012025051
VFTW01000030
Alphaproteobacteria
Mesorhizobium sp. B2-8-3 [VFTW]
7154
7078
-
Pro
TGG
[ENA]
¡û
>W2012025217
VFUA01000026
Alphaproteobacteria
Mesorhizobium sp. B2-7-1 [VFUA]
4470
4394
-
Pro
TGG
[ENA]
¡û
>W2012026817
VFVI01000003
Alphaproteobacteria
Mesorhizobium sp. B2-4-6 [VFVI]
331277
331201
-
Pro
TGG
[ENA]
¡û
>W2012028805
VFWX01000016
Alphaproteobacteria
Mesorhizobium sp. CU3 [VFWX]
20157
20233
+
Pro
TGG
[ENA]
¡û
>W2012028866
VFWY01000147
Alphaproteobacteria
Mesorhizobium sp. CU2 [VFWY]
2074
2150
+
Pro
TGG
[ENA]
¡û
>W2012079841
VLJG01000001
Alphaproteobacteria
Aminobacter sp. J44 [VLJG]
61602
61678
+
Pro
TGG
[ENA]
¡û
>W2012080310
VLJP01000034
Alphaproteobacteria
Mesorhizobium sp. J18 [VLJP]
51088
51164
+
Pro
TGG
[ENA]
¡û
>W2012080630
VLJW01000024
Alphaproteobacteria
Aminobacter sp. J15 [VLJW]
787
711
-
Pro
TGG
[ENA]
¡û
>W2110188989
JABVCF010000001
Alphaproteobacteria
Pseudaminobacter sp. HC 19 HC19 [JABVCF]
448228
448152
-
Pro
TGG
[ENA]
¡û
>W2110319026
JADGMQ010000003
Alphaproteobacteria
Aquamicrobium sp. cd-1 [JADGMQ]
143943
143867
-
Pro
TGG
[ENA]
¡û
>W2110576361
JAGWCR010000001
Alphaproteobacteria
Pseudaminobacter sp. 19-2017 [JAGWCR]
448228
448152
-
Pro
TGG
[ENA]
¡û
>C211008936
AP023247
Alphaproteobacteria
Mesorhizobium sp. 131-2-1 [AP023247]
4707387
4707463
+
Pro
TGG
-
¡û
>C211009143
AP023262
Alphaproteobacteria
Mesorhizobium sp. L-8-3 [AP023262]
5921961
5922037
+
Pro
TGG
-
¡û
>C211009193
AP023263
Alphaproteobacteria
Mesorhizobium sp. L-8-10 [AP023263]
6074370
6074446
+
Pro
TGG
-
¡û
>C231185978
CP083951
Alphaproteobacteria
Mesorhizobium sp. B2-8-5 [CP083951]
5220873
5220949
+
Pro
TGG
-
¡û
>C241087378
CP044218
Alphaproteobacteria
Mesorhizobium terrae NIBRBAC000500504 [CP044218]
4478915
4478839
-
Pro
TGG
-
¡û
>W1511588802
LBCQ01000001
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
505162
505086
-
Pro
TGG
[ENA]
¡û
>W1610660491
LJSD01000037
Alphaproteobacteria
Mesorhizobium sp. 1M-11 [LJSD]
79724
79800
+
Pro
TGG
[ENA]
¡û
>W1610726741
LMFV01000034
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
141325
141249
-
Pro
TGG
[ENA]
¡û
>W1610727381
LMGJ01000003
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
241152
241228
+
Pro
TGG
[ENA]
¡û
>W1610773112
LNTU01000012
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
668136
668212
+
Pro
TGG
[ENA]
¡û
>W1710608922
FXBL01000004
Alphaproteobacteria
Mesorhizobium australicum [FXBL]
2511014
2510938
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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