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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188798 (25 seq.)
>W141055173
AONB01000003
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
105974
106050
+
Arg
ACG
[ENA]
¡û
>W141055174
AONB01000003
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
106078
106154
+
Arg
ACG
[ENA]
¡û
>WENV181319293
OFKD01004598
[OFKD] marine metagenome; seawater
509
585
+
Arg
ACG
[ENA]
¢þ
>WENV182556844
OJDH01000265
[OJDH] seawater metagenome; Sea water
103
179
+
Arg
ACG
[ENA]
¢þ
>WENV170015529
AZIH01003071
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
354
278
-
Arg
ACG
[ENA]
¢þ
>WENV170015530
AZIH01003071
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
247
171
-
Arg
ACG
[ENA]
¢þ
>C191100231
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
535298
535374
+
Arg
ACG
-
¡û
>C191100233
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
535565
535641
+
Arg
ACG
-
¡û
>C191100234
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
535696
535772
+
Arg
ACG
-
¡û
>C191100235
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
535827
535903
+
Arg
ACG
-
¡û
>C191100236
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
535958
536034
+
Arg
ACG
-
¡û
>C191100237
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
536089
536165
+
Arg
ACG
-
¡û
>W1910371775
FUFT01000001
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
8
84
+
Arg
ACG
[ENA]
¡û
>W1910371776
FUFT01000001
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
158
234
+
Arg
ACG
[ENA]
¡û
>W1910371777
FUFT01000001
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
310
386
+
Arg
ACG
[ENA]
¡û
>W1910371778
FUFT01000001
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
459
535
+
Arg
ACG
[ENA]
¡û
>W1910371824
FUFT01000008
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
158337
158413
+
Arg
ACG
[ENA]
¡û
>W1910371826
FUFT01000008
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
158604
158680
+
Arg
ACG
[ENA]
¡û
>W1810400743
PYGI01000021
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
89048
89124
+
Arg
ACG
[ENA]
¡û
>W1810400744
PYGI01000021
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
89156
89232
+
Arg
ACG
[ENA]
¡û
>W1810400745
PYGI01000021
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
89254
89330
+
Arg
ACG
[ENA]
¡û
>W1810680806
QKRX01000012
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
76350
76274
-
Arg
ACG
[ENA]
¡û
>W1810680807
QKRX01000012
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
76213
76137
-
Arg
ACG
[ENA]
¡û
>W1510065331
CDBP01000019
Gammaproteobacteria
Aeromonas dhakensis CECT 7289 [CDBP]
16693
16617
-
Arg
ACG
[ENA]
¡û
>W1511349167
JRLB01000011
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
11920
11844
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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