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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188985 (94 seq.)
>W1711128977
LUTR01000011
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76383
76459
+
Met
CAT
[ENA]
¡û
>W1711129040
LUTS01000004
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
32976
32900
-
Met
CAT
[ENA]
¡û
>W1711666872
MRCJ01000007
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
105276
105200
-
Met
CAT
[ENA]
¡û
>W131175754
ARJM01000062
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
87520
87444
-
Met
CAT
[ENA]
¡û
>W131175756
ARJM01000062
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
87284
87208
-
Met
CAT
[ENA]
¡û
>W131222080
AUAZ01000012
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
70006
69930
-
Met
CAT
[ENA]
¡û
>W131222082
AUAZ01000012
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
69828
69752
-
Met
CAT
[ENA]
¡û
>w015098
AAOW01000021
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
2064
2142
+
Met
CAT
[ENA]
¡û
>w015096
AAOW01000021
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
1842
1918
+
Met
CAT
[ENA]
¡û
>WENV180042493
LQAF01000431
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
5365
5441
+
Met
CAT
[ENA]
¡û
>W141055193
AONB01000016
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
83609
83533
-
Met
CAT
[ENA]
¡û
>W141055195
AONB01000016
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
83426
83350
-
Met
CAT
[ENA]
¡û
>WENV183057406
OLHL01001606
[OLHL] seawater metagenome; Sea water
2138
2062
-
Met
CAT
[ENA]
¡û
>WENV183717798
PDWJ01001656
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6268
6344
+
Met
CAT
[ENA]
¡û
>WENV183717800
PDWJ01001656
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6490
6566
+
Met
CAT
[ENA]
¡û
>WENV170015517
AZIH01002610
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
1130
1054
-
Met
CAT
[ENA]
¡û
>WENV170015893
AZIJ01003348
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
212
136
-
Met
CAT
[ENA]
¡û
>WENV170016422
AZIK01004338
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
579
503
-
Met
CAT
[ENA]
¡û
>WENV170112230
CEGE01000134
[CEGE] microbial mat metagenome; grass silage
6011
5935
-
Met
CAT
[ENA]
¡û
>WENV170112232
CEGE01000134
[CEGE] microbial mat metagenome; grass silage
5839
5763
-
Met
CAT
[ENA]
¡û
>WENV170112631
CEGF01007987
[CEGF] microbial mat metagenome; grass silage
249
325
+
Met
CAT
[ENA]
¡û
>WENV170112633
CEGF01007987
[CEGF] microbial mat metagenome; grass silage
421
497
+
Met
CAT
[ENA]
¡û
>WENV170112637
CEGF01008372
[CEGF] microbial mat metagenome; grass silage
457
381
-
Met
CAT
[ENA]
¡û
>WENV170112639
CEGF01008372
[CEGF] microbial mat metagenome; grass silage
287
211
-
Met
CAT
[ENA]
¡û
>WENV170263014
CERC01012151
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9094
9170
+
Met
CAT
[ENA]
¡û
>WENV170655542
JTFN01042943
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
235
311
+
Met
CAT
[ENA]
¡û
>WENV170655544
JTFN01042943
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
411
487
+
Met
CAT
[ENA]
¡û
>WENV170656827
JTFO01048048
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
235
311
+
Met
CAT
[ENA]
¡û
>WENV170656829
JTFO01048048
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
411
487
+
Met
CAT
[ENA]
¡û
>WENV170657250
JTFO01111155
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
105
181
+
Met
CAT
[ENA]
¡û
>WENV170657252
JTFO01111155
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
280
356
+
Met
CAT
[ENA]
¡û
>WENV170658509
JTFP01128892
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
778
854
+
Met
CAT
[ENA]
¡û
>W141557701
JHVJ01000006
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
252138
252214
+
Met
CAT
[ENA]
¡û
>W141557703
JHVJ01000006
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
252320
252396
+
Met
CAT
[ENA]
¡û
>W141712304
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
140628
140552
-
Met
CAT
[ENA]
¡û
>W141712306
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
140439
140363
-
Met
CAT
[ENA]
¡û
>W141713660
JMSZ01000016
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
337350
337274
-
Met
CAT
[ENA]
¡û
>W141713662
JMSZ01000016
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
337169
337093
-
Met
CAT
[ENA]
¡û
>W1810248949
PQBW01002382
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
421
345
-
Met
CAT
[ENA]
¡û
>W1810248951
PQBW01002382
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
239
163
-
Met
CAT
[ENA]
¡û
>W1810680780
QKRX01000001
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
56556
56480
-
Met
CAT
[ENA]
¡û
>W1810680782
QKRX01000001
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
56373
56297
-
Met
CAT
[ENA]
¡û
>W2010683137
JACEMT010000052
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
244462
244538
+
Met
CAT
[ENA]
¡û
>W2010683139
JACEMT010000052
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
244635
244711
+
Met
CAT
[ENA]
¡û
>W2011522301
SACQ01000006
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
57810
57734
-
Met
CAT
[ENA]
¡û
>W2011522303
SACQ01000006
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
57620
57544
-
Met
CAT
[ENA]
¡û
>W2011633656
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
286304
286380
+
Met
CAT
[ENA]
¡û
>W2011633658
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
286487
286563
+
Met
CAT
[ENA]
¡û
>W2011639479
SMRS01000001
Gammaproteobacteria
Nitrincola sp. MEB193 [SMRS]
432445
432369
-
Met
CAT
[ENA]
¡û
>W2011639481
SMRS01000001
Gammaproteobacteria
Nitrincola sp. MEB193 [SMRS]
432269
432193
-
Met
CAT
[ENA]
¡û
>W2011963798
VAWC01000005
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
213531
213607
+
Met
CAT
[ENA]
¡û
>W2012209743
VYTY01000014
Gammaproteobacteria
Nitrincola alkalisediminis JCM 19317 [VYTY]
55061
54985
-
Met
CAT
[ENA]
¡û
>W2012209745
VYTY01000014
Gammaproteobacteria
Nitrincola alkalisediminis JCM 19317 [VYTY]
54878
54802
-
Met
CAT
[ENA]
¡û
>W2110026494
BMIJ01000007
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
142735
142659
-
Met
CAT
[ENA]
¡û
>W2110026496
BMIJ01000007
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
142538
142462
-
Met
CAT
[ENA]
¡û
>W2110030752
BMLT01000011
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
41791
41715
-
Met
CAT
[ENA]
¡û
>W2110030754
BMLT01000011
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
41585
41509
-
Met
CAT
[ENA]
¡û
>W2110313403
JADEYS010000012
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
88438
88362
-
Met
CAT
[ENA]
¡û
>W2110313405
JADEYS010000012
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
88255
88179
-
Met
CAT
[ENA]
¡û
>W2110500809
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
111197
111121
-
Met
CAT
[ENA]
¡û
>W2110602350
JAHHDZ010000002
Gammaproteobacteria
Neptunomonas phycophila 3B05 [JAHHDZ]
12398
12322
-
Met
CAT
[ENA]
¡û
>W2110639281
JAHQZT010000004
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
89420
89344
-
Met
CAT
[ENA]
¡û
>W2110639283
JAHQZT010000004
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
89246
89170
-
Met
CAT
[ENA]
¡û
>W2110640662
JAHREP010000002
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
112509
112433
-
Met
CAT
[ENA]
¡û
>W2110640664
JAHREP010000002
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
112310
112234
-
Met
CAT
[ENA]
¡û
>W2110640665
JAHREP010000002
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
112223
112147
-
Met
CAT
[ENA]
¡û
>W2110683912
JAILYN010000005
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
66646
66570
-
Met
CAT
[ENA]
¡û
>C211032084
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3233878
3233954
+
Met
CAT
-
¡û
>C211032086
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3234050
3234126
+
Met
CAT
-
¡û
>C231011241
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4107339
4107415
+
Met
CAT
-
¡û
>C231011396
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3850020
3850096
+
Met
CAT
-
¡û
>C231019853
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3417987
3418063
+
Met
CAT
-
¡û
>C231313140
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
576403
576327
-
Met
CAT
-
¡û
>C231313142
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
576227
576151
-
Met
CAT
-
¡û
>C241010923
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1106575
1106651
+
Met
CAT
-
¡û
>C241010925
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1106776
1106852
+
Met
CAT
-
¡û
>C241087499
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
3375028
3375104
+
Met
CAT
-
¡û
>W1511349184
JRLB01000084
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
20027
19951
-
Met
CAT
[ENA]
¡û
>W1511349186
JRLB01000084
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
19840
19764
-
Met
CAT
[ENA]
¡û
>W11170394
AFPL01000022
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
230538
230614
+
Met
CAT
[ENA]
¡û
>C161091170
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4369863
4369939
+
Met
CAT
[Ensembl]
¡û
>C161091172
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4370226
4370302
+
Met
CAT
[Ensembl]
¡û
>W1610062672
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
14689
14765
+
Met
CAT
[ENA]
¡û
>W1610062674
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
15049
15125
+
Met
CAT
[ENA]
¡û
>W1610917242
LSMR01000119
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
10567
10643
+
Met
CAT
[ENA]
¡û
>W1610940050
LUTR01000011
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76383
76459
+
Met
CAT
[ENA]
¡û
>W1610940113
LUTS01000004
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
32976
32900
-
Met
CAT
[ENA]
¡û
>W1710060148
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
14689
14765
+
Met
CAT
[ENA]
¡û
>W1710060150
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
15049
15125
+
Met
CAT
[ENA]
¡û
>W1710533778
FNRJ01000019
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
55655
55579
-
Met
CAT
[ENA]
¡û
>W1710533780
FNRJ01000019
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
55485
55409
-
Met
CAT
[ENA]
¡û
>W1710539742
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
124415
124491
+
Met
CAT
[ENA]
¡û
>W1710539744
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
124597
124673
+
Met
CAT
[ENA]
¡û
>W1710596392
FTMN01000006
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
272304
272380
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK