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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189189 (108 seq.)
>W1711305211
MAKX01000003
Bacteroidota
Tenacibaculum soleae [MAKX]
4271
4195
-
Ala
TGC
[ENA]
¡û
>WENV180080745
MPMC02047869
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
510
436
-
Ala
TGC
[ENA]
¡û
>WENV180356581
OBNL01000011
[OBNL] marine metagenome; ENVO:00002010
2230
2156
-
Ala
TGC
[ENA]
¡û
>WENV180590342
OCOT01000889
[OCOT] marine metagenome; ENVO:00002010
810
734
-
Ala
TGC
[ENA]
¡û
>WENV180634392
OCRB01005771
[OCRB] metagenome; diffuse fluid
317
391
+
Ala
TGC
[ENA]
¡û
>WENV181316526
OFJU01009273
[OFJU] marine metagenome; seawater
202
128
-
Ala
TGC
[ENA]
¡û
>WENV181385565
OFRJ01000089
[OFRJ] marine metagenome; seawater
747
821
+
Ala
TGC
[ENA]
¡û
>WENV181391650
OFRT01035152
[OFRT] seawater metagenome; seawater
477
401
-
Ala
TGC
[ENA]
¡û
>WENV181392667
OFRX01001353
[OFRX] seawater metagenome; seawater
2328
2252
-
Ala
TGC
[ENA]
¡û
>WENV182554775
OJCW01009888
[OJCW] seawater metagenome; Sea water
131
205
+
Ala
TGC
[ENA]
¡û
>WENV182566298
OJEJ01008408
[OJEJ] seawater metagenome; Sea water
858
932
+
Ala
TGC
[ENA]
¡û
>WENV182567529
OJEO01004101
[OJEO] seawater metagenome; Sea water
147
223
+
Ala
TGC
[ENA]
¡û
>WENV182581621
OJGX01022587
[OJGX] seawater metagenome; Sea water
795
719
-
Ala
TGC
[ENA]
¡û
>WENV182590267
OJIH01012566
[OJIH] seawater metagenome; Sea water
739
663
-
Ala
TGC
[ENA]
¡û
>WENV183061445
OLHZ01011203
[OLHZ] seawater metagenome; Sea water
1119
1045
-
Ala
TGC
[ENA]
¡û
>WENV183618217
OOFN01006321
[OOFN] marine metagenome; seawater
527
601
+
Ala
TGC
[ENA]
¡û
>WENV183619154
OOFP01035074
[OOFP] marine metagenome; seawater
477
401
-
Ala
TGC
[ENA]
¡û
>WENV183620071
OOFR01004145
[OOFR] marine metagenome; seawater
442
518
+
Ala
TGC
[ENA]
¡û
>WENV183625547
OOGG01000216
[OOGG] marine metagenome; sea ice
2878
2802
-
Ala
TGC
[ENA]
¡û
>WENV183625598
OOGG01002919
[OOGG] marine metagenome; sea ice
183
257
+
Ala
TGC
[ENA]
¡û
>WENV183627993
OOGM01000462
[OOGM] marine metagenome; sea ice
159
235
+
Ala
TGC
[ENA]
¡û
>WENV183629020
OOGP01001268
[OOGP] marine metagenome; seawater
178
254
+
Ala
TGC
[ENA]
¡û
>WENV170177289
CEOT01006732
[CEOT] marine metagenome genome assembly TARA_064_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1258
1182
-
Ala
TGC
[ENA]
¡û
>WENV170221584
CEQB01045903
[CEQB] marine metagenome genome assembly TARA_052_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
671
747
+
Ala
TGC
[ENA]
¡û
>WENV170230125
CEQH01005477
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
289
363
+
Ala
TGC
[ENA]
¡û
>WENV170598235
FUWD010030092
[FUWD] metagenome; unknown
834
758
-
Ala
TGC
[ENA]
¡û
>WENV170598451
FUWD010035600
[FUWD] metagenome; unknown
141
215
+
Ala
TGC
[ENA]
¡û
>WENV170619620
FUWD013017866
[FUWD] metagenome; unknown
452
528
+
Ala
TGC
[ENA]
¡û
>WENV170624289
FUWD013179144
[FUWD] metagenome; unknown
899
823
-
Ala
TGC
[ENA]
¡û
>WENV170624401
FUWD013181103
[FUWD] metagenome; unknown
1237
1163
-
Ala
TGC
[ENA]
¡û
>WENV170627288
FUWD013232491
[FUWD] metagenome; unknown
1950
2026
+
Ala
TGC
[ENA]
¡û
>WENV170627318
FUWD013232615
[FUWD] metagenome; unknown
3368
3292
-
Ala
TGC
[ENA]
¡û
>WENV170627388
FUWD013232659
[FUWD] metagenome; unknown
17110
17186
+
Ala
TGC
[ENA]
¡û
>WENV170627454
FUWD013232840
[FUWD] metagenome; unknown
45655
45579
-
Ala
TGC
[ENA]
¡û
>WENV170627467
FUWD013232898
[FUWD] metagenome; unknown
3375
3299
-
Ala
TGC
[ENA]
¡û
>WENV170627475
FUWD013232922
[FUWD] metagenome; unknown
28053
27977
-
Ala
TGC
[ENA]
¡û
>C191127520
CP034563
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
685803
685877
+
Ala
TGC
-
¡û
>C191127521
CP034563
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
798229
798303
+
Ala
TGC
-
¡û
>W1911501415
OEND01000072
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
2730
2654
-
Ala
TGC
[ENA]
¡û
>W1810156056
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1495877
1495951
+
Ala
TGC
[ENA]
¡û
>W1810156074
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
4259039
4258965
-
Ala
TGC
[ENA]
¡û
>W1810156076
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
4251998
4251924
-
Ala
TGC
[ENA]
¡û
>W1810156078
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
3934582
3934508
-
Ala
TGC
[ENA]
¡û
>W1810156080
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
3503168
3503094
-
Ala
TGC
[ENA]
¡û
>W2011160727
OEND01000072
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
2730
2654
-
Ala
TGC
[ENA]
¡û
>ENV09003932
ADIF01000149
Marine metagenome apSum_C1
2141
2217
+
Ala
TGC
[ENA]
¡û
>C231571073
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
238288
238362
+
Ala
TGC
-
¡û
>C231571075
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
244354
244430
+
Ala
TGC
-
¡û
>C231571077
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
250482
250556
+
Ala
TGC
-
¡û
>C231571079
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
256551
256625
+
Ala
TGC
-
¡û
>C231571087
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
483510
483584
+
Ala
TGC
-
¡û
>C231571092
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
737345
737419
+
Ala
TGC
-
¡û
>C231571094
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
1166482
1166556
+
Ala
TGC
-
¡û
>C231571121
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
1823184
1823110
-
Ala
TGC
-
¡û
>C231571123
CP115915
Bacteroidota
Tenacibaculum dicentrarchi 18-3141 [CP115915]
1300554
1300480
-
Ala
TGC
-
¡û
>C231571195
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
86041
86115
+
Ala
TGC
-
¡û
>C231571197
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
92135
92209
+
Ala
TGC
-
¡û
>C231571199
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
250947
251021
+
Ala
TGC
-
¡û
>C231571201
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
257210
257284
+
Ala
TGC
-
¡û
>C231571206
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
537735
537809
+
Ala
TGC
-
¡û
>C231571216
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
849622
849696
+
Ala
TGC
-
¡û
>C231571218
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
1180865
1180939
+
Ala
TGC
-
¡û
>C231571246
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
1965777
1965703
-
Ala
TGC
-
¡û
>C231571248
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
1314225
1314151
-
Ala
TGC
-
¡û
>C231576550
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
248824
248900
+
Ala
TGC
-
¡û
>C231576552
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
255405
255481
+
Ala
TGC
-
¡û
>C231576560
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
489167
489243
+
Ala
TGC
-
¡û
>C231576565
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
778291
778367
+
Ala
TGC
-
¡û
>C231576567
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
1249019
1249095
+
Ala
TGC
-
¡û
>C231576596
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
1897309
1897233
-
Ala
TGC
-
¡û
>C231576598
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
1397007
1396931
-
Ala
TGC
-
¡û
>C231576611
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
252536
252611
+
Ala
TGC
-
¡û
>C231576613
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
259365
259440
+
Ala
TGC
-
¡û
>C231576615
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
265908
265984
+
Ala
TGC
-
¡û
>C231576620
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
500249
500325
+
Ala
TGC
-
¡û
>C231576625
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
763300
763375
+
Ala
TGC
-
¡û
>C231576627
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
1252709
1252785
+
Ala
TGC
-
¡û
>C231576654
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
1837746
1837670
-
Ala
TGC
-
¡û
>C231576656
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
1404180
1404104
-
Ala
TGC
-
¡û
>C231576667
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
256616
256692
+
Ala
TGC
-
¡û
>C231576669
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
263141
263217
+
Ala
TGC
-
¡û
>C231576677
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
498383
498459
+
Ala
TGC
-
¡û
>C231576682
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
756095
756171
+
Ala
TGC
-
¡û
>C231576684
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
1245691
1245767
+
Ala
TGC
-
¡û
>C231576713
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
1884813
1884737
-
Ala
TGC
-
¡û
>C231576715
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
1400120
1400044
-
Ala
TGC
-
¡û
>W2110803773
WXXR01000040
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO008 [WXXR]
581
505
-
Ala
TGC
[ENA]
¡û
>W2110803822
WXXS01000056
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO026 [WXXS]
503
579
+
Ala
TGC
[ENA]
¡û
>W2110803872
WXXT01000033
Bacteroidota
Tenacibaculum finnmarkense genomovar finnmarkense TNO031 [WXXT]
1499
1575
+
Ala
TGC
[ENA]
¡û
>W2110803968
WXXV01000032
Bacteroidota
Tenacibaculum finnmarkense genomovar finnmarkense TNO037 [WXXV]
3399
3323
-
Ala
TGC
[ENA]
¡û
>W2110804064
WXXX01000041
Bacteroidota
Tenacibaculum piscium TNO063 [WXXX]
1172
1096
-
Ala
TGC
[ENA]
¡û
>W2110804113
WXXY01000042
Bacteroidota
Tenacibaculum piscium TNO064 [WXXY]
479
403
-
Ala
TGC
[ENA]
¡û
>W2110804162
WXXZ01000032
Bacteroidota
Tenacibaculum piscium TNO066 [WXXZ]
1108
1034
-
Ala
TGC
[ENA]
¡û
>W2110804356
WXYD01000059
Bacteroidota
Tenacibaculum finnmarkense genomovar ulcerans TNO075 [WXYD]
741
665
-
Ala
TGC
[ENA]
¡û
>C161059076
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
245264
245340
+
Ala
TGC
[Ensembl]
¡û
>C161059078
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
251495
251571
+
Ala
TGC
[Ensembl]
¡û
>C161059080
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
257864
257940
+
Ala
TGC
[Ensembl]
¡û
>C161059082
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
264561
264637
+
Ala
TGC
[Ensembl]
¡û
>C161059084
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
270792
270868
+
Ala
TGC
[Ensembl]
¡û
>C161059091
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
504106
504182
+
Ala
TGC
[Ensembl]
¡û
>C161059096
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
842629
842705
+
Ala
TGC
[Ensembl]
¡û
>C161059098
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
1349763
1349839
+
Ala
TGC
[Ensembl]
¡û
>C161059127
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
1887741
1887665
-
Ala
TGC
[Ensembl]
¡û
>C161059129
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
1498916
1498840
-
Ala
TGC
[Ensembl]
¡û
>W1610080926
BDCW01000005
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
3423
3347
-
Ala
TGC
[ENA]
¡û
>ENV001482
AY933592
Environmental sample from ENV division of INSDC
139
215
+
Ala
TGC
[ENA]
>ENV003810
DQ009476
Environmental sample from ENV division of INSDC
1626
1702
+
Ala
TGC
[ENA]
>W1710079577
BDCW01000005
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
3423
3347
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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