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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189323 (29 seq.)
>W1711096458
LTHT01000162
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
27383
27459
+
Arg
ACG
[ENA]
¡û
>WENV181428026
OGCU01000994
[OGCU] metagenome; Human gut stool
99
175
+
Arg
ACG
[ENA]
¢þ
>WENV181458508
OGEK01000039
[OGEK] metagenome; Human gut stool
103658
103582
-
Arg
ACG
[ENA]
¢þ
>WENV181474054
OGFC01001381
[OGFC] metagenome; Human gut stool
2438
2362
-
Arg
ACG
[ENA]
¢þ
>WENV181557863
OGIW01000324
[OGIW] metagenome; Human gut stool
37642
37718
+
Arg
ACG
[ENA]
¢þ
>WENV181560425
OGJC01000177
[OGJC] metagenome; Human gut stool
34928
35004
+
Arg
ACG
[ENA]
¢þ
>WENV181561310
OGJD01001052
[OGJD] metagenome; Human gut stool
17571
17647
+
Arg
ACG
[ENA]
¢þ
>WENV181579570
OGJZ01000278
[OGJZ] metagenome; Human gut stool
27314
27238
-
Arg
ACG
[ENA]
¢þ
>WENV181627669
OGMN01002722
[OGMN] metagenome; Human gut stool
7491
7567
+
Arg
ACG
[ENA]
¢þ
>WENV181948149
OGZE01000550
[OGZE] human gut metagenome; faeces
10464
10388
-
Arg
ACG
[ENA]
¢þ
>WENV181965403
OGZT01000474
[OGZT] human gut metagenome; faeces
13756
13680
-
Arg
ACG
[ENA]
¢þ
>WENV181970788
OGZY01000054
[OGZY] human gut metagenome; faeces
31372
31448
+
Arg
ACG
[ENA]
¢þ
>WENV181986694
OHAM01002193
[OHAM] human gut metagenome; faeces
10811
10887
+
Arg
ACG
[ENA]
¢þ
>WENV182866466
OKRR01000290
[OKRR] human gut metagenome; faeces
55527
55451
-
Arg
ACG
[ENA]
¢þ
>WENV183290149
OLSH01000003
[OLSH] human gut metagenome; faeces
42082
42158
+
Arg
ACG
[ENA]
¢þ
>WENV183760744
PPYE01236430
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3908
3984
+
Arg
ACG
[ENA]
¢þ
>WENV183780426
PPYF01171701
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34700
34624
-
Arg
ACG
[ENA]
¢þ
>C181003936
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
3638114
3638038
-
Arg
ACG
-
¡û
>C181160994
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1338702
1338778
+
Arg
ACG
-
¡û
>C181161051
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1658932
1659008
+
Arg
ACG
-
¡û
>C181216747
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
107913
107989
+
Arg
ACG
-
¡û
>C191210239
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2791724
2791648
-
Arg
ACG
-
¡û
>C191219278
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3616277
3616353
+
Arg
ACG
-
¡û
>W09118769
ACDH01000021
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
42424
42500
+
Arg
ACG
[ENA]
¡û
>W09125183
ACIE01000044
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
35257
35333
+
Arg
ACG
[ENA]
¡û
>W1810791357
QRIG01000013
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
41697
41773
+
Arg
ACG
[ENA]
¡û
>W1810818378
QSDE01000002
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
42211
42287
+
Arg
ACG
[ENA]
¡û
>W1810832222
QSOW01000013
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
36740
36816
+
Arg
ACG
[ENA]
¡û
>W121021751
AGWJ01000043
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
34406
34330
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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