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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189424 (92 seq.)
>w023655
AAYB01000001
Alphaproteobacteria
Roseobacter sp. CCS2 [AAYB]
307047
307125
+
Met
CAT
[ENA]
¡û
>C171047853
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
465612
465688
+
Met
CAT
-
¡û
>C171092063
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
1766316
1766240
-
Met
CAT
-
¡û
>W08005775
ABIE01000001
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
162155
162231
+
Met
CAT
[ENA]
¡û
>W08005845
ABIF01000002
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
487953
487880
-
Met
CAT
[ENA]
¡û
>WENV170014684
AYSL01005017
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
1025
1101
+
Met
CAT
[ENA]
¡û
>WENV170022593
BCQK01023967
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
687
763
+
Met
CAT
[ENA]
¡û
>WENV170023765
BCQL01002768
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
393
317
-
Met
CAT
[ENA]
¡û
>WENV170023910
BCQL01009442
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1478
1402
-
Met
CAT
[ENA]
¡û
>C181008412
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
375605
375681
+
Met
CAT
-
¡û
>C181008494
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
3178941
3178865
-
Met
CAT
-
¡û
>C181008526
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
283541
283617
+
Met
CAT
-
¡û
>C181008608
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
3089685
3089609
-
Met
CAT
-
¡û
>C181008665
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
3037328
3037252
-
Met
CAT
-
¡û
>C181008722
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
3006940
3006864
-
Met
CAT
-
¡û
>C181008757
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
379468
379544
+
Met
CAT
-
¡û
>C181008895
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
2968332
2968256
-
Met
CAT
-
¡û
>C181008952
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
3051625
3051549
-
Met
CAT
-
¡û
>C181008985
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
221579
221655
+
Met
CAT
-
¡û
>C181009066
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
3091361
3091285
-
Met
CAT
-
¡û
>C181009123
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
3005466
3005390
-
Met
CAT
-
¡û
>C181009238
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
2956318
2956242
-
Met
CAT
-
¡û
>C181009295
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
2968332
2968256
-
Met
CAT
-
¡û
>C181009468
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
2928571
2928495
-
Met
CAT
-
¡û
>C181009581
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
3159911
3159835
-
Met
CAT
-
¡û
>C181009638
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
3063078
3063002
-
Met
CAT
-
¡û
>C181009752
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
3089684
3089608
-
Met
CAT
-
¡û
>C181009785
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
283542
283618
+
Met
CAT
-
¡û
>C181009867
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
2953877
2953801
-
Met
CAT
-
¡û
>C181009901
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
375605
375681
+
Met
CAT
-
¡û
>C181009982
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
2968332
2968256
-
Met
CAT
-
¡û
>C181048961
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
392485
392561
+
Met
CAT
-
¡û
>C181049018
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
392485
392561
+
Met
CAT
-
¡û
>C191083152
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
3129695
3129619
-
Met
CAT
-
¡û
>C191083208
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
3103013
3102937
-
Met
CAT
-
¡û
>C191083266
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
2068539
2068463
-
Met
CAT
-
¡û
>W1910285108
FREV01000004
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
298224
298300
+
Met
CAT
[ENA]
¡û
>C141011164
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
375708
375784
+
Met
CAT
[Ensembl]
¡û
>W1810102057
PGTY01000003
Alphaproteobacteria
Yoonia maricola DSM 29128 [PGTY]
243127
243203
+
Met
CAT
[ENA]
¡û
>W1810185219
PKFN01000008
Alphaproteobacteria
Yoonia maritima YPC211 [PKFN]
566148
566224
+
Met
CAT
[ENA]
¡û
>W1810364919
PVTP01000004
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
102857
102781
-
Met
CAT
[ENA]
¡û
>W1810514052
QBUD01000017
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
25303
25227
-
Met
CAT
[ENA]
¡û
>W1810584271
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
1042992
1043068
+
Met
CAT
[ENA]
¡û
>W1810658646
QJJL01000003
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
388440
388364
-
Met
CAT
[ENA]
¡û
>W1810759671
QPJP01000017
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
25303
25227
-
Met
CAT
[ENA]
¡û
>W1810762287
QPMK01000012
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
105328
105404
+
Met
CAT
[ENA]
¡û
>W2010395371
FREV01000004
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
298224
298300
+
Met
CAT
[ENA]
¡û
>W2010583014
JAAZTJ010000068
Alphaproteobacteria
Rhodobacteraceae bacterium R_SAG1 [JAAZTJ]
6738
6814
+
Met
CAT
[ENA]
¡û
>W2110515304
JAFMPQ010000008
Alphaproteobacteria
Cognatishimia sp. F0-27 [JAFMPQ]
128099
128175
+
Met
CAT
[ENA]
¡û
>W2110532175
JAGEUF010000005
Alphaproteobacteria
Phaeobacter sp. HS011 [JAGEUF]
166574
166498
-
Met
CAT
[ENA]
¡û
>W2110547979
JAGHRF010000003
Alphaproteobacteria
Phaeobacter italicus R17_0 [JAGHRF]
223544
223620
+
Met
CAT
[ENA]
¡û
>W2110641720
JAHSPD010000001
Alphaproteobacteria
Roseovarius sp. LXJ103 [JAHSPD]
1997981
1997905
-
Met
CAT
[ENA]
¡û
>W2110652514
JAHVIJ010000004
Alphaproteobacteria
Phaeobacter italicus DP7Y7-1 [JAHVIJ]
158558
158482
-
Met
CAT
[ENA]
¡û
>W2110654308
JAHVJP010000003
Alphaproteobacteria
Phaeobacter italicus DP2N14-3 [JAHVJP]
159082
159006
-
Met
CAT
[ENA]
¡û
>W2110701002
JAIUZL010000005
Alphaproteobacteria
Phaeobacter italicus DP3N0-3 [JAIUZL]
88830
88906
+
Met
CAT
[ENA]
¡û
>C211127344
CP060010
Alphaproteobacteria
Cognatishimia activa ECT2AJA-044 [CP060010]
844563
844639
+
Met
CAT
-
¡û
>C231165611
CP080275
Alphaproteobacteria
Phaeobacter piscinae S26 [CP080275]
3038203
3038127
-
Met
CAT
-
¡û
>C231169990
CP081166
Alphaproteobacteria
Phaeobacter inhibens M619 [CP081166]
1654065
1653989
-
Met
CAT
-
¡û
>C231170037
CP081170
Alphaproteobacteria
Phaeobacter inhibens M623 [CP081170]
3145631
3145555
-
Met
CAT
-
¡û
>C231170361
CP081212
Alphaproteobacteria
Phaeobacter inhibens M624 [CP081212]
3135440
3135364
-
Met
CAT
-
¡û
>C231170418
CP081216
Alphaproteobacteria
Phaeobacter inhibens M625 [CP081216]
3119660
3119584
-
Met
CAT
-
¡û
>C231170462
CP081221
Alphaproteobacteria
Phaeobacter inhibens M626 [CP081221]
1737886
1737962
+
Met
CAT
-
¡û
>C231170531
CP081225
Alphaproteobacteria
Phaeobacter inhibens M627 [CP081225]
3113538
3113462
-
Met
CAT
-
¡û
>C231170589
CP081230
Alphaproteobacteria
Phaeobacter inhibens M628 [CP081230]
3192521
3192445
-
Met
CAT
-
¡û
>C231170646
CP081235
Alphaproteobacteria
Phaeobacter inhibens M631 [CP081235]
3132734
3132658
-
Met
CAT
-
¡û
>C231170817
CP081248
Alphaproteobacteria
Phaeobacter inhibens M634 [CP081248]
3040248
3040172
-
Met
CAT
-
¡û
>C231170874
CP081252
Alphaproteobacteria
Phaeobacter inhibens M635 [CP081252]
3050965
3050889
-
Met
CAT
-
¡û
>C231170988
CP081262
Alphaproteobacteria
Phaeobacter inhibens M643 [CP081262]
3084074
3083998
-
Met
CAT
-
¡û
>C231171045
CP081266
Alphaproteobacteria
Phaeobacter inhibens M644 [CP081266]
3130957
3130881
-
Met
CAT
-
¡û
>C231171102
CP081271
Alphaproteobacteria
Phaeobacter inhibens M646 [CP081271]
3136450
3136374
-
Met
CAT
-
¡û
>C231502414
CP106738
Alphaproteobacteria
Roseovarius sp. HL-MP18 [CP106738]
904710
904786
+
Met
CAT
-
¡û
>C241261826
CP125870
Alphaproteobacteria
Phaeobacter inhibens S4Sm [CP125870]
3254113
3254037
-
Met
CAT
-
¡û
>W2310023476
BSKP01000001
Alphaproteobacteria
Phaeobacter inhibens 191018_A02 [BSKP]
417675
417751
+
Met
CAT
[ENA]
¡û
>W2310023534
BSKQ01000001
Alphaproteobacteria
Phaeobacter italicus Dej080120_05 [BSKQ]
367431
367507
+
Met
CAT
[ENA]
¡û
>W1510650449
CVQZ01000017
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
344697
344773
+
Met
CAT
[ENA]
¡û
>W1510650753
CVRL01000046
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
42982
43058
+
Met
CAT
[ENA]
¡û
>W1510650785
CVRM01000022
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
344697
344773
+
Met
CAT
[ENA]
¡û
>W1511388773
JSWJ01000014
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
18086
18010
-
Met
CAT
[ENA]
¡û
>W1511388833
JSWK01000016
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
168322
168246
-
Met
CAT
[ENA]
¡û
>W1511518655
JXYE01000002
Alphaproteobacteria
Loktanella sp. S4079 [JXYE]
1379992
1380068
+
Met
CAT
[ENA]
¡û
>W1511583817
LAUK01000010
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
25367
25443
+
Met
CAT
[ENA]
¡û
>C121003797
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
3102954
3102878
-
Met
CAT
[Ensembl]
¡û
>W1610016169
AOQA01000010
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
179111
179035
-
Met
CAT
[ENA]
¡û
>W1610628532
LIGP01000002
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
324917
324841
-
Met
CAT
[ENA]
¡û
>W1610641289
LJAL01000004
Alphaproteobacteria
Loktanella sp. 5RATIMAR09 [LJAL]
238162
238238
+
Met
CAT
[ENA]
¡û
>W1610789485
LOHU01000078
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
173507
173431
-
Met
CAT
[ENA]
¡û
>W1710013060
AOQA01000010
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
179111
179035
-
Met
CAT
[ENA]
¡û
>W1710538987
FNUZ01000001
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
464822
464898
+
Met
CAT
[ENA]
¡û
>W1710555043
FOIZ01000002
Alphaproteobacteria
Cognatiyoonia koreensis [FOIZ]
49021
49097
+
Met
CAT
[ENA]
¡û
>W1710562485
FOOZ01000005
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
88332
88408
+
Met
CAT
[ENA]
¡û
>W1710575805
FOZM01000001
Alphaproteobacteria
Yoonia litorea [FOZM]
361120
361044
-
Met
CAT
[ENA]
¡û
>W1710600099
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
1851238
1851314
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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