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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189826 (70 seq.)
>W1711714768
MTED01000001
Gammaproteobacteria
Pasteurella multocida subsp. septica [MTED]
408842
408766
-
Asp
GTC
[ENA]
¡û
>W1711766163
MUYD01000008
Gammaproteobacteria
[Haemophilus] ducreyi [MUYD]
74536
74612
+
Asp
GTC
[ENA]
¡û
>C010500
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
161353
161277
-
Asp
GTC
[Ensembl]
¡û
>WENV180148710
OAUK01001640
[OAUK] human gut metagenome; faeces
235
311
+
Asp
GTC
[ENA]
¡û
>WENV180233991
OBCQ01005577
[OBCQ] human gut metagenome; human gut
284
360
+
Asp
GTC
[ENA]
¡û
>W141042501
AMEN01000072
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans Y4 [AMEN]
75805
75729
-
Asp
GTC
[ENA]
¡û
>WENV180456945
OBXT01000294
[OBXT] human gut metagenome; faeces
6957
7033
+
Asp
GTC
[ENA]
¡û
>WENV180638852
OCRI01031979
[OCRI] marine metagenome; Sterile flask
293
217
-
Asp
GTC
[ENA]
¡û
>WENV180750452
ODHS01002479
[ODHS] human metagenome; G_DNA_Supragingival plaque
1462
1538
+
Asp
GTC
[ENA]
¡û
>WENV180759098
ODHY01000524
[ODHY] human metagenome; G_DNA_Buccal mucosa
3749
3825
+
Asp
GTC
[ENA]
¡û
>WENV180796269
ODJB01002578
[ODJB] human metagenome; G_DNA_Supragingival plaque
4857
4933
+
Asp
GTC
[ENA]
¡û
>WENV180796833
ODJB01015560
[ODJB] human metagenome; G_DNA_Supragingival plaque
315
391
+
Asp
GTC
[ENA]
¡û
>WENV180809120
ODJK01004857
[ODJK] human metagenome; G_DNA_Subgingival plaque
2155
2231
+
Asp
GTC
[ENA]
¡û
>WENV180809128
ODJK01005016
[ODJK] human metagenome; G_DNA_Subgingival plaque
3
79
+
Asp
GTC
[ENA]
¡û
>WENV180814010
ODJO01005048
[ODJO] human metagenome; G_DNA_Supragingival plaque
6289
6213
-
Asp
GTC
[ENA]
¡û
>WENV180814823
ODJO01067037
[ODJO] human metagenome; G_DNA_Supragingival plaque
465
389
-
Asp
GTC
[ENA]
¡û
>WENV180822902
ODJW01000491
[ODJW] human metagenome; G_DNA_Supragingival plaque
2782
2858
+
Asp
GTC
[ENA]
¡û
>WENV180822947
ODJW01001106
[ODJW] human metagenome; G_DNA_Supragingival plaque
2123
2199
+
Asp
GTC
[ENA]
¡û
>WENV180885176
ODME01001303
[ODME] human metagenome; G_DNA_Stool
19607
19683
+
Asp
GTC
[ENA]
¡û
>WENV180943338
ODUC01000225
[ODUC] human metagenome; G_DNA_Supragingival plaque
6993
7069
+
Asp
GTC
[ENA]
¡û
>WENV180972705
ODUW01000055
[ODUW] human metagenome; G_DNA_Supragingival plaque
53705
53629
-
Asp
GTC
[ENA]
¡û
>WENV180975802
ODUY01021990
[ODUY] human metagenome; G_DNA_Supragingival plaque
80
4
-
Asp
GTC
[ENA]
¡û
>WENV180986436
ODVK01000007
[ODVK] human metagenome; G_DNA_Supragingival plaque
96323
96399
+
Asp
GTC
[ENA]
¡û
>WENV181009179
ODWE01036609
[ODWE] human metagenome; G_DNA_Supragingival plaque
30
106
+
Asp
GTC
[ENA]
¡û
>WENV181016899
ODWR01011753
[ODWR] human metagenome; G_DNA_Tongue dorsum
80
4
-
Asp
GTC
[ENA]
¡û
>WENV181076372
OEAP01004379
[OEAP] human metagenome; G_DNA_Supragingival plaque
6909
6833
-
Asp
GTC
[ENA]
¡û
>WENV181082419
OEAT01023931
[OEAT] human metagenome; G_DNA_Supragingival plaque
107
31
-
Asp
GTC
[ENA]
¡û
>WENV181084980
OEAX01000739
[OEAX] human metagenome; G_DNA_Tongue dorsum
6574
6650
+
Asp
GTC
[ENA]
¡û
>WENV181107210
OEEI01003275
[OEEI] human metagenome; G_DNA_Supragingival plaque
6016
5940
-
Asp
GTC
[ENA]
¡û
>WENV181108253
OEEI01167443
[OEEI] human metagenome; G_DNA_Supragingival plaque
78
154
+
Asp
GTC
[ENA]
¡û
>WENV181143310
OEHM01000407
[OEHM] human metagenome; G_DNA_Supragingival plaque
16450
16526
+
Asp
GTC
[ENA]
¡û
>WENV181152238
OEIA01000486
[OEIA] human metagenome; G_DNA_Supragingival plaque
13797
13873
+
Asp
GTC
[ENA]
¡û
>WENV181180352
OEJU01000011
[OEJU] human metagenome; G_DNA_Supragingival plaque
131214
131138
-
Asp
GTC
[ENA]
¡û
>WENV181431620
OGDC01002395
[OGDC] metagenome; Human gut stool
182
106
-
Asp
GTC
[ENA]
¡û
>WENV181438089
OGDH01004355
[OGDH] metagenome; Human gut stool
1937
2013
+
Asp
GTC
[ENA]
¡û
>WENV181589209
OGKK01007365
[OGKK] metagenome; Human gut stool
133
57
-
Asp
GTC
[ENA]
¡û
>WENV182427600
OIHW01000611
[OIHW] human gut metagenome; human gut
7014
7090
+
Asp
GTC
[ENA]
¡û
>WENV182447919
OILH01015552
[OILH] human gut metagenome; human gut
176
100
-
Asp
GTC
[ENA]
¡û
>WENV182478781
OIQP01005881
[OIQP] human gut metagenome; human gut
1243
1319
+
Asp
GTC
[ENA]
¡û
>WENV182482864
OIRG01007027
[OIRG] human gut metagenome; human gut
185
109
-
Asp
GTC
[ENA]
¡û
>WENV182538800
OIXV01000267
[OIXV] human gut metagenome; faeces
47521
47445
-
Asp
GTC
[ENA]
¡û
>WENV182632191
OJKW01049876
[OJKW] metagenome; faeces
421
345
-
Asp
GTC
[ENA]
¡û
>WENV182640423
OJLB01010377
[OJLB] metagenome; surface
360
284
-
Asp
GTC
[ENA]
¡û
>WENV182905384
OKTB01030463
[OKTB] human gut metagenome; feces
578
653
+
Asp
GTC
[ENA]
¡û
>WENV182977869
OKYF01014738
[OKYF] human gut metagenome; human gut
149
73
-
Asp
GTC
[ENA]
¡û
>WENV183143136
OLOK01008812
[OLOK] human gut metagenome; faeces
3400
3476
+
Asp
GTC
[ENA]
¡û
>W141401025
JDSO01000042
Gammaproteobacteria
Glaesserella parasuis HPS10 [JDSO]
17581
17505
-
Asp
GTC
[ENA]
¡û
>WENV170570296
FLMP01504375
[FLMP] seawater metagenome; seawater
106
180
+
Asp
GTC
[ENA]
¡û
>C191208975
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
137904
137980
+
Asp
GTC
-
¡û
>W1910617663
LIUN01000004
Gammaproteobacteria
Pasteurella multocida CQ2 [LIUN]
213784
213860
+
Asp
GTC
[ENA]
¡û
>W1911199233
NRDC01000002
Gammaproteobacteria
Aggregatibacter aphrophilus CCUG 11575 [NRDC]
455338
455262
-
Asp
GTC
[ENA]
¡û
>W1911696690
QMGS01000058
Gammaproteobacteria
Aggregatibacter aphrophilus HK83 [QMGS]
13798
13874
+
Asp
GTC
[ENA]
¡û
>W1810273766
PSQH01000001
Gammaproteobacteria
Pasteurella multocida S298D [PSQH]
205618
205694
+
Asp
GTC
[ENA]
¡û
>W2010774399
LIUN01000004
Gammaproteobacteria
Pasteurella multocida CQ2 [LIUN]
213784
213860
+
Asp
GTC
[ENA]
¡û
>W2011047525
NRDC01000002
Gammaproteobacteria
Aggregatibacter aphrophilus CCUG 11575 [NRDC]
455338
455262
-
Asp
GTC
[ENA]
¡û
>W2011276355
QMGS01000058
Gammaproteobacteria
Aggregatibacter aphrophilus HK83 [QMGS]
13798
13874
+
Asp
GTC
[ENA]
¡û
>C201250030
CP051636
Gammaproteobacteria
Avibacterium paragallinarum ADL-AP17 [CP051636]
1646285
1646361
+
Asp
GTC
-
¡û
>C201250131
CP051638
Gammaproteobacteria
Avibacterium paragallinarum ADL-AP15 [CP051638]
1646279
1646355
+
Asp
GTC
-
¡û
>C201250239
CP051640
Gammaproteobacteria
Avibacterium paragallinarum ADL-AP07 [CP051640]
1646465
1646541
+
Asp
GTC
-
¡û
>C201250330
CP051642
Gammaproteobacteria
Avibacterium paragallinarum ADL-AP01 [CP051642]
1645979
1646055
+
Asp
GTC
-
¡û
>W10116682
ADOE01000030
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
6394
6318
-
Asp
GTC
[ENA]
¡û
>W11121388
ADOB01000012
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D17P-2 [ADOB]
104353
104277
-
Asp
GTC
[ENA]
¡û
>W11121535
ADOE01000030
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
6394
6318
-
Asp
GTC
[ENA]
¡û
>C161032701
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
147749
147673
-
Asp
GTC
-
¡û
>C161032753
CP011229
Gammaproteobacteria
[Haemophilus] ducreyi CIP 54.2 [CP011229]
147299
147223
-
Asp
GTC
-
¡û
>C161032805
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
148208
148132
-
Asp
GTC
-
¡û
>C161032856
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
147291
147215
-
Asp
GTC
-
¡û
>C161088081
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
1469066
1468990
-
Asp
GTC
-
¡û
>W121111641
ALJP01000022
Gammaproteobacteria
Haemophilus sputorum HK 2154 [ALJP]
20287
20211
-
Asp
GTC
[ENA]
¡û
>W1710555114
FOJC01000005
Gammaproteobacteria
[Haemophilus] ducreyi [FOJC]
74840
74916
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK