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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189955 (12 seq.)
>WENV182543761
OJBC01003527
[OJBC] seawater metagenome; Sea water
661
585
-
Arg
CCT
[ENA]
¡û
>WENV182544739
OJBJ01000535
[OJBJ] seawater metagenome; Sea water
3454
3378
-
Arg
CCT
[ENA]
¡û
>WENV182544760
OJBJ01001322
[OJBJ] seawater metagenome; Sea water
569
645
+
Arg
CCT
[ENA]
¡û
>WENV182552395
OJCK01000015
[OJCK] seawater metagenome; Sea water
146264
146340
+
Arg
CCT
[ENA]
¡û
>WENV182557665
OJDK01001534
[OJDK] seawater metagenome; Sea water
1762
1686
-
Arg
CCT
[ENA]
¡û
>WENV182567163
OJEN01006919
[OJEN] seawater metagenome; Sea water
1764
1688
-
Arg
CCT
[ENA]
¡û
>WENV182567332
OJEO01000089
[OJEO] seawater metagenome; Sea water
45944
45868
-
Arg
CCT
[ENA]
¡û
>WENV182568613
OJEW01000023
[OJEW] seawater metagenome; Sea water
3430
3354
-
Arg
CCT
[ENA]
¡û
>WENV182577627
OJGH01000028
[OJGH] seawater metagenome; Sea water
3430
3354
-
Arg
CCT
[ENA]
¡û
>WENV182587325
OJHM01000429
[OJHM] seawater metagenome; Sea water
1013
937
-
Arg
CCT
[ENA]
¡û
>WENV182588073
OJHO01002253
[OJHO] seawater metagenome; Sea water
1
77
+
Arg
CCT
[ENA]
¡û
>WENV183057067
OLHK01001692
[OLHK] seawater metagenome; Sea water
3735
3811
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK