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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190788 (76 seq.)
>W1711503747
MKTW01000012
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
200370
200296
-
Pro
GGG
[ENA]
¡û
>W1711503798
MKTY01000014
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
141087
141013
-
Pro
GGG
[ENA]
¡û
>W1711503868
MKUA01000001
Bacteroidota
Sphingobacteriales bacterium 48-107 [MKUA]
51669
51593
-
Pro
GGG
[ENA]
¡û
>W1711715367
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
3181055
3181131
+
Pro
GGG
[ENA]
¡û
>W131169999
ARFF01000006
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
137634
137710
+
Pro
GGG
[ENA]
¡û
>W131225628
AUDS01000028
Bacteroidota
Terrimonas ferruginea DSM 30193 [AUDS]
21020
20944
-
Pro
GGG
[ENA]
¡û
>WENV180039124
LLBY010028724
[LLBY] soil metagenome; soil from tomato rhizosphere
1
75
+
Pro
GGG
[ENA]
¡û
>WENV180041078
LLBZ010041046
[LLBZ] soil metagenome; soil from tomato rhizosphere
2133
2207
+
Pro
GGG
[ENA]
¡û
>WENV180292205
OBIV01350588
[OBIV] soil metagenome; Clay
271
345
+
Pro
GGG
[ENA]
¡û
>WENV181188031
OEOE01015229
[OEOE] activated sludge metagenome; Activated Sludge
605
529
-
Pro
GGG
[ENA]
¡û
>WENV181189115
OEOF01001147
[OEOF] activated sludge metagenome; Activated Sludge
2931
2855
-
Pro
GGG
[ENA]
¡û
>WENV181308422
OFIS01016943
[OFIS] sludge metagenome; sludge
379
453
+
Pro
GGG
[ENA]
¡û
>WENV181312272
OFJB01068231
[OFJB] sludge metagenome; sludge
305
231
-
Pro
GGG
[ENA]
¡û
>WENV181402513
OFTY01003010
[OFTY] sludge metagenome; sludge
2740
2814
+
Pro
GGG
[ENA]
¡û
>WENV181402569
OFTY01004530
[OFTY] sludge metagenome; sludge
75
-1
-
Pro
GGG
[ENA]
¡û
>WENV181838937
OGVN01038378
[OGVN] freshwater metagenome; freshwater
291
367
+
Pro
GGG
[ENA]
¡û
>WENV181851426
OGWE01034661
[OGWE] freshwater metagenome; freshwater
275
351
+
Pro
GGG
[ENA]
¡û
>WENV183092986
OLLP01000775
[OLLP] soil metagenome; soil
7182
7256
+
Pro
GGG
[ENA]
¡û
>WENV183731788
PJTT01000182
[PJTT] soil metagenome; Soil (2) enriched on wood chips
75825
75751
-
Pro
GGG
[ENA]
¡û
>WENV183743519
PJUJ01003521
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1693
1617
-
Pro
GGG
[ENA]
¡û
>WENV183744745
PJUL01000166
[PJUL] feces metagenome; Chicken feces enriched on filter paper
18719
18795
+
Pro
GGG
[ENA]
¡û
>WENV170009321
APMI01000072
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1179705
1179631
-
Pro
GGG
[ENA]
¡û
>WENV170009414
APMI01000190
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
44066
43992
-
Pro
GGG
[ENA]
¡û
>WENV170012136
APMI01124618
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1018
1092
+
Pro
GGG
[ENA]
¡û
>WENV170680871
LFEF01028623
[LFEF] freshwater metagenome; waterbloom
1754214
1754290
+
Pro
GGG
[ENA]
¡û
>WENV170710967
LNFM01003139
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
83609
83535
-
Pro
GGG
[ENA]
¡û
>WENV170990790
MWWA01045616
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
161
237
+
Pro
GGG
[ENA]
¡û
>WENV170995193
MWWE01201443
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
184
260
+
Pro
GGG
[ENA]
¡û
>C181090221
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
3324287
3324361
+
Pro
GGG
-
¡û
>C191085435
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
1073735
1073661
-
Pro
GGG
-
¡û
>W1911741157
QUZZ01000006
Bacteroidota
Taibaiella sp. F-4 [QUZZ]
343864
343938
+
Pro
GGG
[ENA]
¡û
>W1911744263
QVNU01000001
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
1181381
1181307
-
Pro
GGG
[ENA]
¡û
>W1911787328
QXZY01000001
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
636673
636599
-
Pro
GGG
[ENA]
¡û
>W1810393052
PYAW01000004
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
179160
179086
-
Pro
GGG
[ENA]
¡û
>W1810586522
QFFK01000007
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
157536
157610
+
Pro
GGG
[ENA]
¡û
>W1810693509
QLLL01000004
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
587585
587659
+
Pro
GGG
[ENA]
¡û
>C151016391
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
1944928
1944852
-
Pro
GGG
[Ensembl]
¡û
>W2010106785
BKAU01000005
Bacteroidota
Chitinophaga cymbidii NBRC 109752 [BKAU]
1013303
1013377
+
Pro
GGG
[ENA]
¡û
>W2010213332
CABHMS010000003
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
8977
8903
-
Pro
GGG
[ENA]
¡û
>W2010213399
CABHMT010000004
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
609821
609747
-
Pro
GGG
[ENA]
¡û
>W2010445828
JAABOK010000004
Bacteroidota
Chitinophaga sp. O9 [JAABOK]
547928
547854
-
Pro
GGG
[ENA]
¡û
>W2010447435
JAACJR010000006
Bacteroidota
Sediminibacterium sp. WSJ-3 [JAACJR]
484430
484504
+
Pro
GGG
[ENA]
¡û
>W2010585574
JABAIA010000004
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
91569
91495
-
Pro
GGG
[ENA]
¡û
>W2011306539
QUZZ01000006
Bacteroidota
Taibaiella sp. F-4 [QUZZ]
343864
343938
+
Pro
GGG
[ENA]
¡û
>W2011308991
QVNU01000001
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
1181381
1181307
-
Pro
GGG
[ENA]
¡û
>W2011338679
QXZY01000001
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
636673
636599
-
Pro
GGG
[ENA]
¡û
>W2011429014
RIAR02000001
Bacteroidota
Chitinophaga sp. Mgbs1 [RIAR]
2826967
2827041
+
Pro
GGG
[ENA]
¡û
>W2011458275
RPDH01000003
Bacteroidota
Chitinophaga sp. ZY74 [RPDH]
780037
780111
+
Pro
GGG
[ENA]
¡û
>W2011497065
RXLO01000001
Bacteroidota
Chitinophaga rhizosphaerae T16R-86 [RXLO]
38590
38664
+
Pro
GGG
[ENA]
¡û
>W2011544710
SDHZ01000001
Bacteroidota
Filimonas sp. TTM-71 [SDHZ]
1389133
1389207
+
Pro
GGG
[ENA]
¡û
>W2012047838
VIWA01000010
Bacteroidota
Chitinophaga pinensis 1204 [VIWA]
173614
173688
+
Pro
GGG
[ENA]
¡û
>W2012082553
VLLG01000005
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
79498
79572
+
Pro
GGG
[ENA]
¡û
>W2012156567
VUOC01000002
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
763909
763983
+
Pro
GGG
[ENA]
¡û
>W2012426540
WRXN01000020
Bacteroidota
Chitinophaga sp. ysch24 [WRXN]
76761
76835
+
Pro
GGG
[ENA]
¡û
>W2110269458
JACVFB010000007
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
410735
410809
+
Pro
GGG
[ENA]
¡û
>W2110269468
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
943891
943965
+
Pro
GGG
[ENA]
¡û
>W2110668918
JAICCF010000005
Bacteroidota
Chitinophaga sp. B61 [JAICCF]
339434
339509
+
Pro
GGG
[ENA]
¡û
>W2110692678
JAIQDI010000001
Bacteroidota
Niabella sp. 3A5MI-3 [JAIQDI]
338181
338107
-
Pro
GGG
[ENA]
¡û
>C201121012
CP043006
Bacteroidota
Chitinophaga sp. XS-30 [CP043006]
4591089
4591015
-
Pro
GGG
-
¡û
>C211325006
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
8029054
8028980
-
Pro
GGG
-
¡û
>C211365474
CP079103
Bacteroidota
Chitinophaga sp. E66 [CP079103]
2039259
2039333
+
Pro
GGG
-
¡û
>C211365475
CP079103
Bacteroidota
Chitinophaga sp. E66 [CP079103]
2045518
2045592
+
Pro
GGG
-
¡û
>C231156253
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
1694443
1694519
+
Pro
GGG
-
¡û
>C231364557
CP095855
Bacteroidota
Chitinophaga filiformis YT5 [CP095855]
5682857
5682783
-
Pro
GGG
-
¡û
>C241149324
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
2971844
2971770
-
Pro
GGG
-
¡û
>C241325448
CP135920
Bacteroidota
Paraflavitalea speifideaquila BL16E [CP135920]
2949114
2949040
-
Pro
GGG
-
¡û
>C241354783
CP140154
Bacteroidota
Chitinophaga sancti ATCC 23090 [CP140154]
485676
485750
+
Pro
GGG
-
¡û
>W121017757
AGSA01000027
Bacteroidota
Niabella soli DSM 19437 [AGSA]
279174
279250
+
Pro
GGG
[ENA]
¡û
>W1710512661
FMZO01000002
Bacteroidota
Niabella drilacis [FMZO]
340518
340592
+
Pro
GGG
[ENA]
¡û
>W1710515149
FNBN01000007
Bacteroidota
Chitinophaga filiformis [FNBN]
228932
229008
+
Pro
GGG
[ENA]
¡û
>W1710544841
FOBB01000015
Bacteroidota
Chitinophaga rupis [FOBB]
64907
64833
-
Pro
GGG
[ENA]
¡û
>W1710580004
FPIZ01000010
Bacteroidota
Chitinophaga sancti [FPIZ]
282325
282401
+
Pro
GGG
[ENA]
¡û
>W1710583161
FQUO01000019
Bacteroidota
Cnuella takakiae [FQUO]
24352
24428
+
Pro
GGG
[ENA]
¡û
>W1710591048
FRBL01000009
Bacteroidota
Chitinophaga jiangningensis [FRBL]
412684
412758
+
Pro
GGG
[ENA]
¡û
>W1710592522
FRCN01000007
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
29555
29479
-
Pro
GGG
[ENA]
¡û
>W1710601096
FUWZ01000003
Bacteroidota
Chitinophaga eiseniae [FUWZ]
308788
308862
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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