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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190809 (20 seq.)
>WENV180220931
OBAX01000326
[OBAX] human gut metagenome; human gut
5651
5724
+
Ala
GGC
[ENA]
¡û
>WENV180246494
OBDP01000320
[OBDP] human gut metagenome; human gut
5652
5725
+
Ala
GGC
[ENA]
¡û
>WENV180662875
OCVV011099470
[OCVV] gut metagenome; gut
7632
7558
-
Ala
GGC
[ENA]
¡û
>WENV180662876
OCVV011099470
[OCVV] gut metagenome; gut
7632
7558
-
Ala
GGC
[ENA]
¡û
>WENV180672600
OCVV011329977
[OCVV] gut metagenome; gut
11428
11354
-
Ala
GGC
[ENA]
¡û
>WENV180672602
OCVV011329977
[OCVV] gut metagenome; gut
11428
11354
-
Ala
GGC
[ENA]
¡û
>WENV183132969
OLOB01014935
[OLOB] human gut metagenome; faeces
39
112
+
Ala
GGC
[ENA]
¡û
>WENV183507348
OMGY01017023
[OMGY] human gut metagenome; human gut
831
758
-
Ala
GGC
[ENA]
¡û
>At1585
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1403944
1403871
-
Ala
GGC
[Ensembl]
¡û
>W1910576013
JRWK01000002
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
144904
144977
+
Ala
GGC
[ENA]
¡û
>W1910635181
LMVN01000026
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
88130
88055
-
Ala
GGC
[ENA]
¡û
>W1910646613
LWMS01000006
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
24495
24570
+
Ala
GGC
[ENA]
¡û
>W1910656123
MAIF01000059
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
27214
27141
-
Ala
GGC
[ENA]
¡û
>W1910899160
NGJK01000078
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
12366
12293
-
Ala
GGC
[ENA]
¡û
>A241000464
CP014213
Methanobacteriota
Methanosphaera sp. BMS [CP014213]
2553306
2553381
+
Ala
GGC
-
¡û
>W2010761578
JRWK01000002
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
144904
144977
+
Ala
GGC
[ENA]
¡û
>W2010782211
LMVN01000026
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
88130
88055
-
Ala
GGC
[ENA]
¡û
>W2010791857
LWMS01000006
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
24495
24570
+
Ala
GGC
[ENA]
¡û
>W2010803271
MAIF01000059
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
27214
27141
-
Ala
GGC
[ENA]
¡û
>W2010958061
NGJK01000078
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
12366
12293
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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