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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190959 (13 seq.)
>WENV180886048
ODME01020381
[ODME] human metagenome; G_DNA_Stool
1203
1279
+
His
GTG
[ENA]
¡û
>WENV181148937
OEHT01014393
[OEHT] human metagenome; G_DNA_Stool
764
688
-
His
GTG
[ENA]
¡û
>WENV181447457
OGDU01006146
[OGDU] metagenome; Human gut stool
4857
4781
-
His
GTG
[ENA]
¡û
>WENV181640354
OGNE01029692
[OGNE] metagenome; Human gut stool
662
586
-
His
GTG
[ENA]
¡û
>WENV181901180
OGXW01000668
[OGXW] human gut metagenome; faeces
14698
14622
-
His
GTG
[ENA]
¡û
>WENV181941812
OGYY01010274
[OGYY] human gut metagenome; faeces
2065
1989
-
His
GTG
[ENA]
¡û
>WENV181981692
OHAG01005111
[OHAG] human gut metagenome; faeces
82
158
+
His
GTG
[ENA]
¡û
>WENV182870894
OKRU01004818
[OKRU] human gut metagenome; faeces
9148
9072
-
His
GTG
[ENA]
¡û
>WENV182923843
OKUF01014193
[OKUF] human gut metagenome; feces
642
566
-
His
GTG
[ENA]
¡û
>WENV182958786
OKWH01056348
[OKWH] human gut metagenome; human gut
97
173
+
His
GTG
[ENA]
¡û
>WENV183146982
OLOM01052378
[OLOM] human gut metagenome; faeces
270
346
+
His
GTG
[ENA]
¡û
>WENV183181102
OLPI01002999
[OLPI] human gut metagenome; faeces
4892
4968
+
His
GTG
[ENA]
¡û
>WENV183574704
OOCH01056566
[OOCH] human gut metagenome; human gut
24
100
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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