This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191001 (54 seq.)
>WENV180275751
OBHU01000198
[OBHU] human gut metagenome; feces
15083
15159
+
Arg
TCT
[ENA]
¡û
>W141039109
ALWK01000057
Bacillota
Staphylococcus arlettae CVD059 [ALWK]
93866
93942
+
Arg
TCT
[ENA]
¡û
>WENV180526413
OCHI01018178
[OCHI] human gut metagenome; human gut
375
451
+
Arg
TCT
[ENA]
¡û
>WENV181495891
OGGC01009792
[OGGC] metagenome; Human gut stool
1351
1275
-
Arg
TCT
[ENA]
¡û
>WENV181910875
OGYD01000022
[OGYD] human gut metagenome; faeces
87285
87209
-
Arg
TCT
[ENA]
¡û
>WENV182609163
OJJV01003418
[OJJV] metagenome; faeces
3249
3325
+
Arg
TCT
[ENA]
¡û
>WENV183191892
OLPR01041321
[OLPR] human gut metagenome; faeces
123
47
-
Arg
TCT
[ENA]
¡û
>WENV183200523
OLPW01002433
[OLPW] human gut metagenome; faeces
14659
14735
+
Arg
TCT
[ENA]
¡û
>WENV183208965
OLQB01009805
[OLQB] human gut metagenome; faeces
2144
2068
-
Arg
TCT
[ENA]
¡û
>WENV183225576
OLQO01000030
[OLQO] human gut metagenome; faeces
111928
112004
+
Arg
TCT
[ENA]
¡û
>WENV183347773
OLWT01042861
[OLWT] human gut metagenome; feces
330
254
-
Arg
TCT
[ENA]
¡û
>WENV183352604
OLWZ01055784
[OLWZ] human gut metagenome; feces
201
125
-
Arg
TCT
[ENA]
¡û
>WENV183760051
PPYE01219958
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
135
211
+
Arg
TCT
[ENA]
¡û
>W1911495667
OBQF01000001
Bacillota
Salinicoccus kekensis DSM 23173 [OBQF]
677868
677942
+
Arg
TCT
[ENA]
¡û
>W1911616154
PPQB01000010
Bacillota
Staphylococcus arlettae NCTC 12413 [PPQB]
459805
459879
+
Arg
TCT
[ENA]
¡û
>W1911781421
QXRU01000004
Bacillota
Staphylococcus arlettae SNUC 4935 [QXRU]
30128
30202
+
Arg
TCT
[ENA]
¡û
>W1911781487
QXRV01000069
Bacillota
Staphylococcus arlettae SNUC 4202 [QXRV]
7976
8050
+
Arg
TCT
[ENA]
¡û
>W1911781576
QXRW01000129
Bacillota
Staphylococcus arlettae SNUC 3131 [QXRW]
29
103
+
Arg
TCT
[ENA]
¡û
>W1911781592
QXRX01000015
Bacillota
Staphylococcus arlettae SNUC 1480 [QXRX]
18324
18398
+
Arg
TCT
[ENA]
¡û
>W1911781643
QXRY01000116
Bacillota
Staphylococcus arlettae SNUC 1401 [QXRY]
94
20
-
Arg
TCT
[ENA]
¡û
>W1810435282
PZDJ01000001
Bacillota
Staphylococcus arlettae SNUC 4786 [PZDJ]
29916
29990
+
Arg
TCT
[ENA]
¡û
>W1810435359
PZDK01000024
Bacillota
Staphylococcus arlettae SNUC 1715.2 [PZDK]
2227
2153
-
Arg
TCT
[ENA]
¡û
>W1810435412
PZDL01000026
Bacillota
Staphylococcus arlettae SNUC 4426 [PZDL]
3268
3194
-
Arg
TCT
[ENA]
¡û
>W1810435584
PZDO01000029
Bacillota
Staphylococcus arlettae SNUC 3029 [PZDO]
2149
2075
-
Arg
TCT
[ENA]
¡û
>W1810435686
PZDQ01000034
Bacillota
Staphylococcus arlettae SNUC 1576 [PZDQ]
559
485
-
Arg
TCT
[ENA]
¡û
>W1810692359
QLIZ01000001
Bacillota
Staphylococcus arlettae Bari1 [QLIZ]
83140
83214
+
Arg
TCT
[ENA]
¡û
>W1810692491
QLJB01000026
Bacillota
Staphylococcus arlettae Bari3 [QLJB]
1856
1782
-
Arg
TCT
[ENA]
¡û
>W2010576458
JAAVWY010000002
Bacillota
Staphylococcus arlettae N283 [JAAVWY]
492008
491934
-
Arg
TCT
[ENA]
¡û
>W2011156571
OBQF01000001
Bacillota
Salinicoccus kekensis DSM 23173 [OBQF]
677868
677942
+
Arg
TCT
[ENA]
¡û
>W2011209473
PPQB01000010
Bacillota
Staphylococcus arlettae NCTC 12413 [PPQB]
459805
459879
+
Arg
TCT
[ENA]
¡û
>W2011331612
QXRU01000004
Bacillota
Staphylococcus arlettae SNUC 4935 [QXRU]
30128
30202
+
Arg
TCT
[ENA]
¡û
>W2011331678
QXRV01000069
Bacillota
Staphylococcus arlettae SNUC 4202 [QXRV]
7976
8050
+
Arg
TCT
[ENA]
¡û
>W2011331767
QXRW01000129
Bacillota
Staphylococcus arlettae SNUC 3131 [QXRW]
29
103
+
Arg
TCT
[ENA]
¡û
>W2011331783
QXRX01000015
Bacillota
Staphylococcus arlettae SNUC 1480 [QXRX]
18324
18398
+
Arg
TCT
[ENA]
¡û
>W2011331834
QXRY01000116
Bacillota
Staphylococcus arlettae SNUC 1401 [QXRY]
94
20
-
Arg
TCT
[ENA]
¡û
>W2011673079
SPPT01000002
Bacillota
Staphylococcus arlettae IOV5 [SPPT]
30317
30391
+
Arg
TCT
[ENA]
¡û
>W2011840399
UGZE01000001
Bacillota
Staphylococcus arlettae NCTC12413 [UGZE]
1808965
1808891
-
Arg
TCT
[ENA]
¡û
>W2011991702
VDTT01000003
Bacillota
Staphylococcus arlettae DE0598 [VDTT]
29858
29932
+
Arg
TCT
[ENA]
¡û
>W2012231861
WBPQ01000002
Bacillota
Staphylococcus sp. CH99b_3 [WBPQ]
30826
30900
+
Arg
TCT
[ENA]
¡û
>W2110178409
JABGBR010000004
Bacillota
Staphylococcus arlettae R2AA77 [JABGBR]
4852
4778
-
Arg
TCT
[ENA]
¡û
>W2110318386
JADGMC010000002
Bacillota
Staphylococcus arlettae 19428wH1_IOV5 [JADGMC]
30317
30391
+
Arg
TCT
[ENA]
¡û
>W2110451526
JAESMB010000016
Bacillota
Staphylococcus sp. GDX8P114P-2 [JAESMB]
29902
29976
+
Arg
TCT
[ENA]
¡û
>W2110452612
JAESMZ010000013
Bacillota
Staphylococcus sp. GDH8C106P [JAESMZ]
78679
78605
-
Arg
TCT
[ENA]
¡û
>W2110485361
JAFENY010000026
Bacillota
Staphylococcus sp. GDX8P113P-1 [JAFENY]
29811
29885
+
Arg
TCT
[ENA]
¡û
>W2110487310
JAFEPM010000007
Bacillota
Staphylococcus sp. GDB8P47P [JAFEPM]
29884
29958
+
Arg
TCT
[ENA]
¡û
>W2110487372
JAFEPO010000032
Bacillota
Staphylococcus sp. GDB8P25P [JAFEPO]
29897
29971
+
Arg
TCT
[ENA]
¡û
>W2110488079
JAFEQF010000030
Bacillota
Staphylococcus sp. GDY8P100P [JAFEQF]
29935
30009
+
Arg
TCT
[ENA]
¡û
>W2110488264
JAFEQJ010000006
Bacillota
Staphylococcus sp. GDY8P72P [JAFEQJ]
489043
488969
-
Arg
TCT
[ENA]
¡û
>C211365845
CP079109
Bacillota
Nosocomiicoccus ampullae 19-00310 [CP079109]
952777
952704
-
Arg
TCT
-
¡û
>C211395400
CP082336
Bacillota
Staphylococcus arlettae AHKW2e [CP082336]
1710254
1710180
-
Arg
TCT
-
¡û
>C231351109
CP094806
Bacillota
Staphylococcus arlettae IVB6234 [CP094806]
1862890
1862816
-
Arg
TCT
-
¡û
>C231394819
CP097887
Bacillota
Staphylococcus arlettae SA283 [CP097887]
1762814
1762740
-
Arg
TCT
-
¡û
>C241001513
AP019698
Bacillota
Staphylococcus arlettae P2 [AP019698]
1757616
1757542
-
Arg
TCT
-
¡û
>W2110781353
WEIN01000025
Bacillota
Staphylococcus arlettae Bari [WEIN]
5016
4942
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK