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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191471 (55 seq.)
>W1710991679
LPXW01000035
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
34194
34120
-
Leu
TAA
[ENA]
¡û
>W1711008572
LQQC01000004
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
36968
36894
-
Leu
TAA
[ENA]
¡û
>W1711096121
LTHM01000017
Actinomycetota
Brevibacterium sp. HMSC063G07 [LTHM]
106638
106712
+
Leu
TAA
[ENA]
¡û
>W1711185818
LWNS01000018
Actinomycetota
Brevibacterium sp. HMSC08F02 [LWNS]
26247
26173
-
Leu
TAA
[ENA]
¡û
>W1711187133
LWOU01000066
Actinomycetota
Brevibacterium sp. HMSC24B04 [LWOU]
1190
1264
+
Leu
TAA
[ENA]
¡û
>W1711187221
LWOW01000061
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
1180
1254
+
Leu
TAA
[ENA]
¡û
>W1711187754
LWPT01000035
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
3928
3854
-
Leu
TAA
[ENA]
¡û
>C171057880
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1426170
1426096
-
Leu
TAA
-
¡û
>w005565
AAGP01000025
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
19887
19965
+
Leu
TAA
[ENA]
¡û
>WENV180305322
OBJL01004768
[OBJL] human gut metagenome; Skin biopsy
640
714
+
Leu
TAA
[ENA]
¢þ
>W141243110
CAJD01000019
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
362750
362824
+
Leu
TAA
[ENA]
¡û
>W141282892
JAJB01000021
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
27903
27827
-
Leu
TAA
[ENA]
¡û
>WENV183511622
OMJG01001145
[OMJG] food metagenome; Cotija cheese
8755
8679
-
Leu
TAA
[ENA]
¢þ
>WENV183636547
OOKD01107876
[OOKD] human gut metagenome; Skin biopsy
230
156
-
Leu
TAA
[ENA]
¢þ
>WENV183637302
OPGP01025759
[OPGP] human gut metagenome; Material from the ethmoid
447
373
-
Leu
TAA
[ENA]
¢þ
>C191031883
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
1537441
1537365
-
Leu
TAA
-
¡û
>C191031931
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1416652
1416578
-
Leu
TAA
-
¡û
>C191031979
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1328859
1328785
-
Leu
TAA
-
¡û
>C191032026
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1367474
1367400
-
Leu
TAA
-
¡û
>C191032074
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
1472314
1472240
-
Leu
TAA
-
¡û
>C191046873
CP026734
Actinomycetota
Brevibacterium linens ATCC 19391 [CP026734]
1308743
1308667
-
Leu
TAA
-
¡û
>W1910181632
BJME01000009
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
108764
108838
+
Leu
TAA
[ENA]
¡û
>W1910331268
FSLI01000096
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
22726
22802
+
Leu
TAA
[ENA]
¡û
>W1910499986
FXYX01000005
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
101095
101171
+
Leu
TAA
[ENA]
¡û
>W1910500056
FXYY01000017
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
29212
29288
+
Leu
TAA
[ENA]
¡û
>W1910500079
FXYZ01000003
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
283584
283658
+
Leu
TAA
[ENA]
¡û
>W1910500154
FXZA01000012
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
53038
52962
-
Leu
TAA
[ENA]
¡û
>W1910500182
FXZB01000008
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
109519
109593
+
Leu
TAA
[ENA]
¡û
>W1910500288
FXZD01000005
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
233610
233684
+
Leu
TAA
[ENA]
¡û
>W1910500343
FXZE01000021
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
789
863
+
Leu
TAA
[ENA]
¡û
>W1910500435
FXZG01000017
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
5065
4990
-
Leu
TAA
[ENA]
¡û
>W1910500446
FXZH01000001
Actinomycetota
Brevibacterium sp. 239c [FXZH]
49585
49511
-
Leu
TAA
[ENA]
¡û
>W1910500515
FXZI01000003
Actinomycetota
Brevibacterium aurantiacum [FXZI]
51161
51087
-
Leu
TAA
[ENA]
¡û
>W1911203134
NRGO01000009
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
73283
73357
+
Leu
TAA
[ENA]
¡û
>W1911203168
NRGP01000003
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
58860
58785
-
Leu
TAA
[ENA]
¡û
>W1911203216
NRGQ01000003
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
449591
449665
+
Leu
TAA
[ENA]
¡û
>W1911203618
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3205369
3205295
-
Leu
TAA
[ENA]
¡û
>W1911203825
NRHA01000025
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
99756
99830
+
Leu
TAA
[ENA]
¡û
>W1911203853
NRHB01000006
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
342971
343045
+
Leu
TAA
[ENA]
¡û
>W1911596739
PNHK01000001
Actinomycetota
Brevibacterium paucivorans UMB1301 [PNHK]
42490
42564
+
Leu
TAA
[ENA]
¡û
>W1911696930
QNGF01000006
Actinomycetota
Brevibacterium casei S51 [QNGF]
46778
46700
-
Leu
TAA
[ENA]
¡û
>W1810057041
PDHL01000031
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
49570
49494
-
Leu
TAA
[ENA]
¡û
>W1810186026
PKGO01000010
Actinomycetota
Brevibacterium ravenspurgense UMB0426 [PKGO]
94571
94645
+
Leu
TAA
[ENA]
¡û
>W1810721405
QNRZ01000009
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
87674
87750
+
Leu
TAA
[ENA]
¡û
>W1810721500
QNSB01000009
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
87706
87782
+
Leu
TAA
[ENA]
¡û
>W1810756529
QPGC01000011
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
102386
102460
+
Leu
TAA
[ENA]
¡û
>W1810756597
QPGD01000010
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
51035
50961
-
Leu
TAA
[ENA]
¡û
>W1810756662
QPGE01000023
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
50986
50912
-
Leu
TAA
[ENA]
¡û
>W1511402410
JTJZ01000014
Actinomycetota
Brevibacterium linens AE038-8 [JTJZ]
52744
52668
-
Leu
TAA
[ENA]
¡û
>C161078924
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
1454920
1454844
-
Leu
TAA
[Ensembl]
¡û
>W1610069298
BCSJ01000009
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
52647
52571
-
Leu
TAA
[ENA]
¡û
>W1610846294
LPXW01000035
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
34194
34120
-
Leu
TAA
[ENA]
¡û
>W1610846330
LPXX01000015
Actinomycetota
Brevibacterium ravenspurgense 5401308 = CCUG 53855 [LPXX]
362874
362948
+
Leu
TAA
[ENA]
¡û
>W1610857092
LQQC01000004
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
36968
36894
-
Leu
TAA
[ENA]
¡û
>W1710066671
BCSJ01000009
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
52647
52571
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK