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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191853 (85 seq.)
>W1710876629
LMPJ01000012
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
149880
149954
+
Arg
TCG
[ENA]
¡û
>W1711071996
LSHB01000035
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
33995
34069
+
Arg
TCG
[ENA]
¡û
>W1711139044
LVEP01000038
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
253135
253209
+
Arg
TCG
[ENA]
¡û
>W1711206671
LXEI01000013
Bacteroidota
Tamlana agarivorans [LXEI]
136266
136192
-
Arg
TCG
[ENA]
¡û
>W1711305193
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
85599
85523
-
Arg
TCG
[ENA]
¡û
>W1711314280
MAUH01000071
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
5211
5287
+
Arg
TCG
[ENA]
¡û
>W1711622853
MPGM01000004
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
174200
174124
-
Arg
TCG
[ENA]
¡û
>C171066053
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
131129
131055
-
Arg
TCG
-
¡û
>W131220960
AUAA01000034
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
959
885
-
Arg
TCG
[ENA]
¡û
>W131237067
AUMU01000016
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
27152
27228
+
Arg
TCG
[ENA]
¡û
>W131237971
AUSH01000087
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
197892
197968
+
Arg
TCG
[ENA]
¡û
>WENV180395407
OBPT01016524
[OBPT] marine metagenome; ENVO:00002010 seawater
1045
971
-
Arg
TCG
[ENA]
¢þ
>WENV180396502
OBPV01010592
[OBPV] marine metagenome; ENVO:00002010
14
88
+
Arg
TCG
[ENA]
¢þ
>WENV180591516
OCOV01034896
[OCOV] marine metagenome; ENVO:01000301
305
379
+
Arg
TCG
[ENA]
¢þ
>W141079146
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
172284
172208
-
Arg
TCG
[ENA]
¡û
>W141079220
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
65576
65500
-
Arg
TCG
[ENA]
¡û
>WENV181227881
OFDN01066444
[OFDN] hot springs metagenome; Water
223
149
-
Arg
TCG
[ENA]
¢þ
>WENV181856692
OGWN01009516
[OGWN] freshwater metagenome; freshwater
617
543
-
Arg
TCG
[ENA]
¢þ
>WENV182557481
OJDK01000039
[OJDK] seawater metagenome; Sea water
1534
1460
-
Arg
TCG
[ENA]
¢þ
>WENV182567209
OJEN01014711
[OJEN] seawater metagenome; Sea water
764
838
+
Arg
TCG
[ENA]
¢þ
>WENV182586365
OJHK01000130
[OJHK] seawater metagenome; Sea water
10390
10464
+
Arg
TCG
[ENA]
¢þ
>WENV182587326
OJHM01000457
[OJHM] seawater metagenome; Sea water
1672
1598
-
Arg
TCG
[ENA]
¢þ
>WENV183057027
OLHK01000712
[OLHK] seawater metagenome; Sea water
489
563
+
Arg
TCG
[ENA]
¢þ
>WENV183620590
OOFS01003812
[OOFS] marine metagenome; sea ice
816
742
-
Arg
TCG
[ENA]
¢þ
>WENV183628913
OOGO01062854
[OOGO] marine metagenome; sea ice
230
156
-
Arg
TCG
[ENA]
¢þ
>WENV170639200
JFJP01001474
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2815
2891
+
Arg
TCG
[ENA]
¢þ
>WENV170641799
JFJP01037627
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4212
4136
-
Arg
TCG
[ENA]
¢þ
>WENV170646634
JQIA01000656
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
6971
7047
+
Arg
TCG
[ENA]
¢þ
>WENV170783300
MAAC01015658
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
12211
12287
+
Arg
TCG
[ENA]
¢þ
>WENV170783439
MAAC01016874
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
36884
36960
+
Arg
TCG
[ENA]
¢þ
>WENV170783836
MAAC01019213
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
271091
271015
-
Arg
TCG
[ENA]
¢þ
>C181113404
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
2917865
2917939
+
Arg
TCG
-
¡û
>C181123927
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
2478170
2478244
+
Arg
TCG
-
¡û
>C191018070
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
279880
279954
+
Arg
TCG
-
¡û
>C191115494
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
3668589
3668663
+
Arg
TCG
-
¡û
>C191115554
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
1693745
1693819
+
Arg
TCG
-
¡û
>C191120486
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
1013625
1013551
-
Arg
TCG
-
¡û
>W141809252
JPRI01000007
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
200454
200530
+
Arg
TCG
[ENA]
¡û
>W141816628
JQKA01000006
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
845642
845566
-
Arg
TCG
[ENA]
¡û
>W1910695556
MDVN01000020
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
394344
394270
-
Arg
TCG
[ENA]
¡û
>W1910758267
MLJY01000017
Bacteroidota
Formosa algae KMM 8021 [MLJY]
34807
34733
-
Arg
TCG
[ENA]
¡û
>W1910785545
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
2530455
2530381
-
Arg
TCG
[ENA]
¡û
>W1910808930
MUGT01000035
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
90902
90828
-
Arg
TCG
[ENA]
¡û
>W1911564288
PCMW01000045
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
24374
24448
+
Arg
TCG
[ENA]
¡û
>W1810260931
PQNY01000010
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
111516
111590
+
Arg
TCG
[ENA]
¡û
>W1810696102
QLSZ01000007
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
39901
39975
+
Arg
TCG
[ENA]
¡û
>W1810720961
QNRP01000003
Bacteroidota
Oceanihabitans sediminis DSM 28133 [QNRP]
108862
108936
+
Arg
TCG
[ENA]
¡û
>W1810758180
QPIG01000001
Bacteroidota
Oceanihabitans sediminis S9-10 [QPIG]
1101148
1101222
+
Arg
TCG
[ENA]
¡û
>W1810759630
QPJO01000005
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
198713
198639
-
Arg
TCG
[ENA]
¡û
>W1810885400
QUNH01000001
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
1395595
1395669
+
Arg
TCG
[ENA]
¡û
>C151061191
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
1958436
1958512
+
Arg
TCG
[Ensembl]
¡û
>C151062866
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1979825
1979901
+
Arg
TCG
[Ensembl]
¡û
>W1510012893
BBNQ01000006
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
14964
14890
-
Arg
TCG
[ENA]
¡û
>W1510013015
BBNU01000005
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
212599
212673
+
Arg
TCG
[ENA]
¡û
>C11104709
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2538574
2538650
+
Arg
TCG
[Ensembl]
¡û
>W1511222483
JNGS01000020
Bacteroidota
Bizionia psychrotolerans PB-M7 [JNGS]
2284
2208
-
Arg
TCG
[ENA]
¡û
>W1511390859
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
1184020
1183946
-
Arg
TCG
[ENA]
¡û
>W1511398929
JTDW01000019
Bacteroidota
Tamlana sedimentorum JCM 19808 [JTDW]
17759
17685
-
Arg
TCG
[ENA]
¡û
>C161047097
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
2013622
2013546
-
Arg
TCG
[Ensembl]
¡û
>C161105081
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3490415
3490341
-
Arg
TCG
[Ensembl]
¡û
>W1610025996
AUYN01000006
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
17306
17230
-
Arg
TCG
[ENA]
¡û
>W1610082046
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2044757
2044681
-
Arg
TCG
[ENA]
¡û
>W121110484
ALIH01000008
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
99082
99006
-
Arg
TCG
[ENA]
¡û
>W1610587465
LDKC01000006
Bacteroidota
Tamlana sp. s12 [LDKC]
201102
201026
-
Arg
TCG
[ENA]
¡û
>W1610738975
LMPJ01000012
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
149880
149954
+
Arg
TCG
[ENA]
¡û
>W1610911256
LSHB01000035
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
33995
34069
+
Arg
TCG
[ENA]
¡û
>W1610950052
LVEP01000038
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
253135
253209
+
Arg
TCG
[ENA]
¡û
>W1610994177
LXEI01000013
Bacteroidota
Tamlana agarivorans [LXEI]
136266
136192
-
Arg
TCG
[ENA]
¡û
>W1611054735
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
85599
85523
-
Arg
TCG
[ENA]
¡û
>W1611059155
MAUH01000071
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
5211
5287
+
Arg
TCG
[ENA]
¡û
>WENV080117
AATO01006382
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
317
393
+
Arg
TCG
[ENA]
>W1710022045
AUYN01000006
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
17306
17230
-
Arg
TCG
[ENA]
¡û
>W1710080819
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2044757
2044681
-
Arg
TCG
[ENA]
¡û
>W1710516974
FNCZ01000001
Bacteroidota
Winogradskyella thalassocola [FNCZ]
1393478
1393554
+
Arg
TCG
[ENA]
¡û
>W1710538666
FNUS01000006
Bacteroidota
Halpernia humi [FNUS]
105944
106020
+
Arg
TCG
[ENA]
¡û
>W1710559041
FOMI01000005
Bacteroidota
Algibacter pectinivorans [FOMI]
51247
51323
+
Arg
TCG
[ENA]
¡û
>W1710565930
FORQ01000001
Bacteroidota
Kaistella treverensis treverense [FORQ]
178482
178558
+
Arg
TCG
[ENA]
¡û
>W1710570403
FOVD01000001
Bacteroidota
Chryseobacterium oleae [FOVD]
332920
332844
-
Arg
TCG
[ENA]
¡û
>W1710570952
FOVN01000001
Bacteroidota
Bizionia echini [FOVN]
23779
23703
-
Arg
TCG
[ENA]
¡û
>W1710582225
FPKV01000003
Bacteroidota
Flaviramulus basaltis [FPKV]
219448
219524
+
Arg
TCG
[ENA]
¡û
>W1710582611
FQUD01000001
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
1737295
1737371
+
Arg
TCG
[ENA]
¡û
>W1710587348
FQYK01000007
Bacteroidota
Algibacter luteus lutea [FQYK]
46435
46511
+
Arg
TCG
[ENA]
¡û
>W1710592006
FRCD01000006
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
195458
195382
-
Arg
TCG
[ENA]
¡û
>W1710606138
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
165653
165577
-
Arg
TCG
[ENA]
¡û
>W1710706595
LDKC01000006
Bacteroidota
Tamlana sp. s12 [LDKC]
201102
201026
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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