This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191925 (95 seq.)
>W1710979360
LPNY01000139
Campylobacterota
Arcobacter sp. EP1 [LPNY]
152350
152274
-
Asp
GTC
[ENA]
¡û
>WENV180288116
OBIL01055577
[OBIL] metagenome; hydrothermal vent
28
104
+
Asp
GTC
[ENA]
¢þ
>WENV180581900
OCML01020600
[OCML] metagenome; diffuse fluid
112
36
-
Asp
GTC
[ENA]
¢þ
>WENV180634450
OCRB01010785
[OCRB] metagenome; diffuse fluid
176
100
-
Asp
GTC
[ENA]
¢þ
>WENV181211014
OFBJ01004110
[OFBJ] metagenome; hydrothermal vent
1050
974
-
Asp
GTC
[ENA]
¢þ
>WENV181213669
OFBV01019882
[OFBV] metagenome; hydrothermal vent
296
372
+
Asp
GTC
[ENA]
¢þ
>C08000284
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
519767
519694
-
Asp
GTC
[Ensembl]
¡û
>WENV183707071
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4789
4865
+
Asp
GTC
[ENA]
¢þ
>WENV183710813
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
110
186
+
Asp
GTC
[ENA]
¢þ
>WENV183710816
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
394
470
+
Asp
GTC
[ENA]
¢þ
>WENV183712059
PDWI01087276
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2350
2274
-
Asp
GTC
[ENA]
¢þ
>WENV183714099
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
108
184
+
Asp
GTC
[ENA]
¢þ
>WENV183714103
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
606
682
+
Asp
GTC
[ENA]
¢þ
>WENV183715141
PDWI01223422
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1203
1127
-
Asp
GTC
[ENA]
¢þ
>WENV183715788
PDWI01263155
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1544
1468
-
Asp
GTC
[ENA]
¢þ
>WENV183721139
PDWJ01056412
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
113
189
+
Asp
GTC
[ENA]
¢þ
>WENV183721736
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1249
1325
+
Asp
GTC
[ENA]
¢þ
>WENV170012723
ASRN01004658
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
226
302
+
Asp
GTC
[ENA]
¢þ
>WENV170012751
ASRO01000044
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
35929
35853
-
Asp
GTC
[ENA]
¢þ
>WENV170012849
ASRP01001292
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2558
2482
-
Asp
GTC
[ENA]
¢þ
>WENV170012938
ASRQ01000084
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
69
145
+
Asp
GTC
[ENA]
¢þ
>WENV170013020
ASRR01000133
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
9055
8979
-
Asp
GTC
[ENA]
¢þ
>WENV170014430
AYRG01000063
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
69
145
+
Asp
GTC
[ENA]
¢þ
>WENV170635476
JDSF01030745
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
179
255
+
Asp
GTC
[ENA]
¢þ
>WENV170646511
JQGR01017733
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
183
259
+
Asp
GTC
[ENA]
¢þ
>WENV170657823
JTFP01023065
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
731
807
+
Asp
GTC
[ENA]
¢þ
>WENV170780406
MAAB01000709
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2750
2674
-
Asp
GTC
[ENA]
¢þ
>WENV170780518
MAAB01003772
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1177
1101
-
Asp
GTC
[ENA]
¢þ
>WENV170780636
MAAB01010296
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2198
2122
-
Asp
GTC
[ENA]
¢þ
>WENV170780697
MAAB01014312
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2519
2443
-
Asp
GTC
[ENA]
¢þ
>WENV170780796
MAAB01022570
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
442
518
+
Asp
GTC
[ENA]
¢þ
>WENV170780799
MAAB01023096
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
110
186
+
Asp
GTC
[ENA]
¢þ
>WENV170781355
MAAB01032509
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2729
2653
-
Asp
GTC
[ENA]
¢þ
>WENV170782013
MAAC01006227
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3557
3481
-
Asp
GTC
[ENA]
¢þ
>WENV170782973
MAAC01012291
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2254
2178
-
Asp
GTC
[ENA]
¢þ
>C181225281
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
519762
519686
-
Asp
GTC
-
¡û
>C191084462
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
665381
665305
-
Asp
GTC
-
¡û
>C191084466
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
664994
664918
-
Asp
GTC
-
¡û
>C191084514
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
553086
553010
-
Asp
GTC
-
¡û
>C191084518
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552742
552666
-
Asp
GTC
-
¡û
>C191084522
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552381
552305
-
Asp
GTC
-
¡û
>C191084683
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653117
653041
-
Asp
GTC
-
¡û
>C191084687
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652714
652638
-
Asp
GTC
-
¡û
>C191084691
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652291
652215
-
Asp
GTC
-
¡û
>C191178308
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
533373
533297
-
Asp
GTC
-
¡û
>C191186428
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
716713
716637
-
Asp
GTC
-
¡û
>C191186432
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
716272
716196
-
Asp
GTC
-
¡û
>C141005662
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
517744
517668
-
Asp
GTC
[Ensembl]
¡û
>W1911413064
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
47029
46953
-
Asp
GTC
[ENA]
¡û
>W1911413068
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
46619
46543
-
Asp
GTC
[ENA]
¡û
>W1911413107
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16533
16457
-
Asp
GTC
[ENA]
¡û
>W1911413111
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16123
16047
-
Asp
GTC
[ENA]
¡û
>W1911419358
NXAO01000009
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
28505
28429
-
Asp
GTC
[ENA]
¡û
>W1911419402
NXAO01000099
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
169
93
-
Asp
GTC
[ENA]
¡û
>W1911424182
NXFY01000022
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
48575
48499
-
Asp
GTC
[ENA]
¡û
>W1911424205
NXFY01000113
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
82
158
+
Asp
GTC
[ENA]
¡û
>W1911426250
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16273
16197
-
Asp
GTC
[ENA]
¡û
>W1911426254
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
15918
15842
-
Asp
GTC
[ENA]
¡û
>W1911426324
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
83124
83048
-
Asp
GTC
[ENA]
¡û
>W1911426328
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
82737
82661
-
Asp
GTC
[ENA]
¡û
>W1911576294
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
390
314
-
Asp
GTC
[ENA]
¡û
>W1911576310
PDJX01000020
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
235
311
+
Asp
GTC
[ENA]
¡û
>W1911576333
PDJX01000236
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
82
158
+
Asp
GTC
[ENA]
¡û
>W1911576354
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29986
29910
-
Asp
GTC
[ENA]
¡û
>W1911576358
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29583
29507
-
Asp
GTC
[ENA]
¡û
>W1911576362
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29161
29085
-
Asp
GTC
[ENA]
¡û
>W1911576497
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30810
30734
-
Asp
GTC
[ENA]
¡û
>W1911576501
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30456
30380
-
Asp
GTC
[ENA]
¡û
>W1911576634
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236103
236027
-
Asp
GTC
[ENA]
¡û
>W1911576663
PDKG01000004
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
235
311
+
Asp
GTC
[ENA]
¡û
>W1911576889
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
72008
71932
-
Asp
GTC
[ENA]
¡û
>W1911576893
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
71604
71528
-
Asp
GTC
[ENA]
¡û
>W1911576930
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
72041
71965
-
Asp
GTC
[ENA]
¡û
>W1911576934
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
71637
71561
-
Asp
GTC
[ENA]
¡û
>W1911576945
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69610
69534
-
Asp
GTC
[ENA]
¡û
>W1911576949
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69134
69058
-
Asp
GTC
[ENA]
¡û
>W1911577020
PDKO01000016
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
15405
15329
-
Asp
GTC
[ENA]
¡û
>W1911577024
PDKO01000016
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
14964
14888
-
Asp
GTC
[ENA]
¡û
>W1911717874
QQTC01000053
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
5893
5817
-
Asp
GTC
[ENA]
¡û
>W1911746038
QVQX01000004
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
91166
91242
+
Asp
GTC
[ENA]
¡û
>W1911775154
QXMK01000001
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
170726
170802
+
Asp
GTC
[ENA]
¡û
>W1911775349
QXNB01000001
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
12123
12199
+
Asp
GTC
[ENA]
¡û
>W1810295891
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39922
39846
-
Asp
GTC
[ENA]
¡û
>W1810295895
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39518
39442
-
Asp
GTC
[ENA]
¡û
>W1810295899
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39095
39019
-
Asp
GTC
[ENA]
¡û
>C11100405
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
498013
497937
-
Asp
GTC
[Ensembl]
¡û
>W1511517367
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
885498
885574
+
Asp
GTC
[ENA]
¡û
>W1511517371
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
885939
886015
+
Asp
GTC
[ENA]
¡û
>W11143286
AEPT01000011
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
9486
9410
-
Asp
GTC
[ENA]
¡û
>W1610835351
LPNY01000139
Campylobacterota
Arcobacter sp. EP1 [LPNY]
152350
152274
-
Asp
GTC
[ENA]
¡û
>W1710082883
BDIR01000023
Campylobacterota
Arcobacter sp. LA11 [BDIR]
1437
1361
-
Asp
GTC
[ENA]
¡û
>W1710082887
BDIR01000023
Campylobacterota
Arcobacter sp. LA11 [BDIR]
1034
958
-
Asp
GTC
[ENA]
¡û
>W1710602823
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57510
57434
-
Asp
GTC
[ENA]
¡û
>W1710602827
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57109
57033
-
Asp
GTC
[ENA]
¡û
>W1710602831
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
56687
56611
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK