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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191938 (51 seq.)
>W1710863438
LMFC01000005
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
287975
287901
-
Pro
TGG
[ENA]
¡û
>W1710863613
LMFG01000002
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
279783
279857
+
Pro
TGG
[ENA]
¡û
>W1710868768
LMJI01000002
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
510118
510192
+
Pro
TGG
[ENA]
¡û
>W1710875667
LMOO01000006
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
93264
93338
+
Pro
TGG
[ENA]
¡û
>W1710877699
LMQI01000002
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
268187
268111
-
Pro
TGG
[ENA]
¡û
>W1710914205
LNTD01000273
Actinomycetota
Cellulomonas sp. B6 [LNTD]
14442
14368
-
Pro
TGG
[ENA]
¡û
>W131227079
AUEW01000004
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
447364
447440
+
Pro
TGG
[ENA]
¡û
>W1712056166
NFZP01000033
Actinomycetota
Cellulomonas iranensis [NFZP]
2868
2794
-
Pro
TGG
[ENA]
¡û
>WENV181298356
OFHL01085689
[OFHL] soil metagenome; Clay
476
550
+
Pro
TGG
[ENA]
¢þ
>W141241280
CAHD01000231
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
27361
27285
-
Pro
TGG
[ENA]
¡û
>W141279323
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
4353782
4353706
-
Pro
TGG
[ENA]
¡û
>WENV183734879
PJUA01000073
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
12938
12863
-
Pro
TGG
[ENA]
¢þ
>WENV183736315
PJUC01000581
[PJUC] soil metagenome; Soil enriched on filter paper
2493
2418
-
Pro
TGG
[ENA]
¢þ
>W141428881
JEOE01000011
Actinomycetota
Cellulomonas sp. HZM [JEOE]
3803
3729
-
Pro
TGG
[ENA]
¡û
>WENV170961728
MLJW01000703
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
6243
6167
-
Pro
TGG
[ENA]
¢þ
>C191164694
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
2471603
2471527
-
Pro
TGG
-
¡û
>C191183901
CP040899
Actinomycetota
Georgenia wutianyii Z294 [CP040899]
1023013
1023087
+
Pro
TGG
-
¡û
>C191210050
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1552544
1552618
+
Pro
TGG
-
¡û
>W141564164
JIAN01000007
Actinomycetota
Cellulomonas sp. URHE0023 [JIAN]
276609
276533
-
Pro
TGG
[ENA]
¡û
>W141727708
JNFL01000030
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
18570
18496
-
Pro
TGG
[ENA]
¡û
>W1910129170
BHYL01000048
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
24767
24692
-
Pro
TGG
[ENA]
¡û
>W1910155467
BIMR01000028
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
13174
13099
-
Pro
TGG
[ENA]
¡û
>W1910181136
BJLR01000019
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
254861
254786
-
Pro
TGG
[ENA]
¡û
>W1911768082
QXFN01000005
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
266499
266425
-
Pro
TGG
[ENA]
¡û
>W1810058302
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
809916
809842
-
Pro
TGG
[ENA]
¡û
>W1810568817
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
88022
87947
-
Pro
TGG
[ENA]
¡û
>W1810702137
QMGD01000580
Actinomycetota
Cellulomonas sp. B12 [QMGD]
758
684
-
Pro
TGG
[ENA]
¡û
>W1810702188
QMGE01000930
Actinomycetota
Cellulomonas sp. K38 [QMGE]
352
276
-
Pro
TGG
[ENA]
¡û
>W1810918543
QWKP01000208
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
15360
15434
+
Pro
TGG
[ENA]
¡û
>C11105021
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1552520
1552596
+
Pro
TGG
[Ensembl]
¡û
>C11105139
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
2389560
2389484
-
Pro
TGG
[Ensembl]
¡û
>W1511595485
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
461121
461195
+
Pro
TGG
[ENA]
¡û
>W1610029802
AXNT01000008
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
16319
16243
-
Pro
TGG
[ENA]
¡û
>W1610051501
BBGX01000263
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
864
940
+
Pro
TGG
[ENA]
¡û
>W1610051563
BBGZ01000484
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
851
777
-
Pro
TGG
[ENA]
¡û
>W1610051793
BBHG01000531
Actinomycetota
Cellulomonas chitinilytica JCM 16927 [BBHG]
477
553
+
Pro
TGG
[ENA]
¡û
>W1610068102
BCRB01000038
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
13358
13432
+
Pro
TGG
[ENA]
¡û
>W1610207179
FCOT01000008
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
71974
72050
+
Pro
TGG
[ENA]
¡û
>W1610725784
LMFC01000005
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
287975
287901
-
Pro
TGG
[ENA]
¡û
>W1610725959
LMFG01000002
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
279783
279857
+
Pro
TGG
[ENA]
¡û
>W1610731114
LMJI01000002
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
510118
510192
+
Pro
TGG
[ENA]
¡û
>W1610738013
LMOO01000006
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
93264
93338
+
Pro
TGG
[ENA]
¡û
>W1610740045
LMQI01000002
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
268187
268111
-
Pro
TGG
[ENA]
¡û
>W1610772564
LNTD01000273
Actinomycetota
Cellulomonas sp. B6 [LNTD]
14442
14368
-
Pro
TGG
[ENA]
¡û
>W1710027130
AXNT01000008
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
16319
16243
-
Pro
TGG
[ENA]
¡û
>W1710047879
BBGX01000263
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
864
940
+
Pro
TGG
[ENA]
¡û
>W1710047941
BBGZ01000484
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
851
777
-
Pro
TGG
[ENA]
¡û
>W1710048171
BBHG01000531
Actinomycetota
Cellulomonas chitinilytica JCM 16927 [BBHG]
477
553
+
Pro
TGG
[ENA]
¡û
>W1710065475
BCRB01000038
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
13358
13432
+
Pro
TGG
[ENA]
¡û
>W1710207873
FCOT01000008
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
71974
72050
+
Pro
TGG
[ENA]
¡û
>W1710556175
FOKA01000001
Actinomycetota
Cellulomonas marina [FOKA]
293235
293311
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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