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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192017 (48 seq.)
>W1711314145
MAUF01000047
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
2879
2955
+
Met
CAT
[ENA]
¡û
>W1712003188
NEGB01000002
Gammaproteobacteria
Acinetobacter silvestris ANC 4999 [NEGB]
519275
519199
-
Met
CAT
[ENA]
¡û
>W1712003269
NEGC01000003
Gammaproteobacteria
Acinetobacter sp. ANC 4470 [NEGC]
289018
288942
-
Met
CAT
[ENA]
¡û
>W1712003689
NEGI01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
308954
308878
-
Met
CAT
[ENA]
¡û
>W1712003690
NEGI01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
308168
308092
-
Met
CAT
[ENA]
¡û
>W1712003750
NEGJ01000005
Gammaproteobacteria
Acinetobacter sp. ANC 3832 [NEGJ]
171272
171196
-
Met
CAT
[ENA]
¡û
>W1712003751
NEGJ01000005
Gammaproteobacteria
Acinetobacter sp. ANC 3832 [NEGJ]
169278
169202
-
Met
CAT
[ENA]
¡û
>W131157119
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
61544
61620
+
Met
CAT
[ENA]
¡û
>W131157122
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
61876
61952
+
Met
CAT
[ENA]
¡û
>W131157125
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
62209
62285
+
Met
CAT
[ENA]
¡û
>W131115978
APQB01000019
Gammaproteobacteria
Acinetobacter ursingii NIPH 706 [APQB]
325684
325760
+
Met
CAT
[ENA]
¡û
>W131116050
APQC01000009
Gammaproteobacteria
Acinetobacter ursingii ANC 3649 [APQC]
12191
12267
+
Met
CAT
[ENA]
¡û
>C171052993
CP016895
Gammaproteobacteria
Acinetobacter larvae BRTC-1 [CP016895]
1135410
1135486
+
Met
CAT
-
¡û
>C171052994
CP016895
Gammaproteobacteria
Acinetobacter larvae BRTC-1 [CP016895]
1135670
1135746
+
Met
CAT
-
¡û
>WENV181205870
OFAQ01002846
[OFAQ] metagenome; hydrothermal vent
784
860
+
Met
CAT
[ENA]
¢þ
>WENV181206438
OFAV01000548
[OFAV] metagenome; hydrothermal vent
1044
1120
+
Met
CAT
[ENA]
¢þ
>WENV181206962
OFAX01007182
[OFAX] metagenome; hydrothermal vent
109
33
-
Met
CAT
[ENA]
¢þ
>WENV183780866
PPYF01188073
[PPYF] human gut metagenome; stool from patient with Crohn's disease
408
332
-
Met
CAT
[ENA]
¢þ
>WENV183780869
PPYF01188073
[PPYF] human gut metagenome; stool from patient with Crohn's disease
77
1
-
Met
CAT
[ENA]
¢þ
>W141449355
JEZN01000004
Gammaproteobacteria
Acinetobacter sp. 479375 479375 [JEZN]
29005
28929
-
Met
CAT
[ENA]
¡û
>C181160563
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3382257
3382181
-
Met
CAT
-
¡û
>C181160566
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3381926
3381850
-
Met
CAT
-
¡û
>C181160569
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3381593
3381517
-
Met
CAT
-
¡û
>C181178016
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
781601
781677
+
Met
CAT
-
¡û
>C191005565
AP018824
Gammaproteobacteria
Acinetobacter ursingii M3 [AP018824]
2005780
2005856
+
Met
CAT
-
¡û
>W1911597422
PNHY01000001
Gammaproteobacteria
Acinetobacter ursingii UMB1319 [PNHY]
113101
113177
+
Met
CAT
[ENA]
¡û
>W1810043783
BHGA01000020
Gammaproteobacteria
Acinetobacter ursingii OCU_Ac4 [BHGA]
91281
91357
+
Met
CAT
[ENA]
¡û
>W1810304612
PTPV01000021
Gammaproteobacteria
Acinetobacter ursingii blaTEM-116 [PTPV]
10421
10345
-
Met
CAT
[ENA]
¡û
>W1810423064
PYSI01000002
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
136612
136688
+
Met
CAT
[ENA]
¡û
>W10106094
ACYF01000073
Gammaproteobacteria
Candidatus Regiella insecticola insecticola LSR1 [ACYF]
278
202
-
Met
CAT
[ENA]
¡û
>W1510018008
BBTT01000013
Gammaproteobacteria
Acinetobacter ursingii NBRC 110511 [BBTT]
59085
59009
-
Met
CAT
[ENA]
¡û
>W1510018423
BBUB01000014
Gammaproteobacteria
Acinetobacter ursingii NBRC 110512 [BBUB]
12175
12251
+
Met
CAT
[ENA]
¡û
>W1510018464
BBUC01000007
Gammaproteobacteria
Acinetobacter ursingii NBRC 110605 [BBUC]
59085
59009
-
Met
CAT
[ENA]
¡û
>W11108417
ACYF01000073
Gammaproteobacteria
Candidatus Regiella insecticola insecticola LSR1 [ACYF]
278
202
-
Met
CAT
[ENA]
¡û
>W1511347985
JRKB01000092
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
75
-1
-
Met
CAT
[ENA]
¡û
>W1511348003
JRKB01000135
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
330
405
+
Met
CAT
[ENA]
¡û
>W1511456719
JVHT01000035
Gammaproteobacteria
Acinetobacter ursingii 421_ABAU [JVHT]
59370
59294
-
Met
CAT
[ENA]
¡û
>W1511478868
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
87695
87619
-
Met
CAT
[ENA]
¡û
>W1511478871
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
87363
87287
-
Met
CAT
[ENA]
¡û
>W1511478874
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
87030
86954
-
Met
CAT
[ENA]
¡û
>W1511500911
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
1141970
1142046
+
Met
CAT
[ENA]
¡û
>W1511500912
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
1143021
1143097
+
Met
CAT
[ENA]
¡û
>C161109345
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2451523
2451599
+
Met
CAT
[Ensembl]
¡û
>C161109348
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2451854
2451930
+
Met
CAT
[Ensembl]
¡û
>C161109351
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2452187
2452263
+
Met
CAT
[Ensembl]
¡û
>W121046924
AIEA01000015
Gammaproteobacteria
Acinetobacter ursingii DSM 16037 = CIP 107286 [AIEA]
68006
68082
+
Met
CAT
[ENA]
¡û
>W1610061055
BCMC01000035
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
12096
12172
+
Met
CAT
[ENA]
¡û
>W1710058351
BCMC01000035
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
12096
12172
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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