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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192520 (20 seq.)
>WENV180110885
OAPN01011399
[OAPN] marine metagenome; 2011
823
747
-
Ile2
CAT
[ENA]
¢þ
>WENV181368465
OFQL01006989
[OFQL] freshwater metagenome; Freshwater Lake
687
761
+
Ile2
CAT
[ENA]
¢þ
>WENV181369511
OFQP01005466
[OFQP] freshwater metagenome; Freshwater Lake
898
822
-
Ile2
CAT
[ENA]
¢þ
>WENV181370822
OFQT01014646
[OFQT] freshwater metagenome; Freshwater Lake
235
159
-
Ile2
CAT
[ENA]
¢þ
>WENV170609100
FUWD011249487
[FUWD] metagenome; unknown
138
62
-
Met
CAT
[ENA]
¢þ
>WENV170623192
FUWD013140562
[FUWD] metagenome; unknown
503
429
-
Met
CAT
[ENA]
¢þ
>WENV170631449
FUWD013352807
[FUWD] metagenome; unknown
503
429
-
Met
CAT
[ENA]
¢þ
>WENV170645505
JNSK01000025
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
36564
36488
-
Met
CAT
[ENA]
¢þ
>WENV170645541
JNSK01000090
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16432
16356
-
Met
CAT
[ENA]
¢þ
>WENV170645559
JNSK01000145
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10155
10079
-
Met
CAT
[ENA]
¢þ
>C181018692
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1321876
1321952
+
Met
CAT
-
¡û
>C181020866
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
414709
414633
-
Met
CAT
-
¡û
>C181020867
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
413456
413380
-
Met
CAT
-
¡û
>C181021275
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
380988
380912
-
Met
CAT
-
¡û
>C181021388
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
390465
390389
-
Met
CAT
-
¡û
>WENV022142
AACY020626077
Marine microbial communities from Global Ocean Sampling (GOS)
623
701
+
Met
CAT
[ENA]
>WENV044704
AACY022445111
Marine microbial communities from Global Ocean Sampling (GOS)
618
694
+
Met
CAT
[ENA]
>WENV057869
AACY023309353
Marine microbial communities from Global Ocean Sampling (GOS)
370
446
+
Met
CAT
[ENA]
>WENV058085
AACY023317093
Marine microbial communities from Global Ocean Sampling (GOS)
1169
1093
-
Met
CAT
[ENA]
>WENV058371
AACY023326713
Marine microbial communities from Global Ocean Sampling (GOS)
219
143
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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