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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192563 (25 seq.)
>WENV180695476
OCZS013527014
[OCZS] soil metagenome; soil
106
30
-
Pro
TGG
[ENA]
¡û
>WENV183669499
ORJL010847689
[ORJL] groundwater metagenome; groundwater
165
241
+
Pro
TGG
[ENA]
¡û
>WENV183674268
ORJL011368821
[ORJL] groundwater metagenome; groundwater
1119
1043
-
Pro
TGG
[ENA]
¡û
>WENV183686331
ORMF010984881
[ORMF] groundwater metagenome; groundwater
271
347
+
Pro
TGG
[ENA]
¡û
>WENV183690422
ORMF011594883
[ORMF] groundwater metagenome; groundwater
345
269
-
Pro
TGG
[ENA]
¡û
>WENV183691127
ORMF011709062
[ORMF] groundwater metagenome; groundwater
79
3
-
Pro
TGG
[ENA]
¡û
>WENV183694872
ORMF012299155
[ORMF] groundwater metagenome; groundwater
620
544
-
Pro
TGG
[ENA]
¡û
>W2110496037
JAFFZO010000001
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
21536
21612
+
Pro
TGG
[ENA]
¡û
>W2110496038
JAFFZO010000001
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
21690
21766
+
Pro
TGG
[ENA]
¡û
>W2110496039
JAFFZO010000001
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
21844
21920
+
Pro
TGG
[ENA]
¡û
>W2110496151
JAFFZP010000030
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
39908
39832
-
Pro
TGG
[ENA]
¡û
>W2110496152
JAFFZP010000030
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
39754
39678
-
Pro
TGG
[ENA]
¡û
>W2110496153
JAFFZP010000030
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
39600
39524
-
Pro
TGG
[ENA]
¡û
>W2110500771
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
1417941
1418017
+
Pro
TGG
[ENA]
¡û
>W2110500772
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
1418075
1418151
+
Pro
TGG
[ENA]
¡û
>W2110500773
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
1418192
1418268
+
Pro
TGG
[ENA]
¡û
>W2110500774
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
1418323
1418399
+
Pro
TGG
[ENA]
¡û
>C231011389
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3192447
3192523
+
Pro
TGG
-
¡û
>C231011390
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3192581
3192657
+
Pro
TGG
-
¡û
>C231011391
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3192698
3192774
+
Pro
TGG
-
¡û
>C231011392
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3192829
3192905
+
Pro
TGG
-
¡û
>C231011468
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
3001044
3001120
+
Pro
TGG
-
¡û
>C231011469
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
3001199
3001275
+
Pro
TGG
-
¡û
>C231011470
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
3001353
3001429
+
Pro
TGG
-
¡û
>WENV077319
AAFX01022499
Soil microbial communities from Minnesota Farm
874
950
+
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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