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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19308 (94 seq.)
>W131044492
AMQS01000013
Bacillota
Lactococcus garvieae DCC43 [AMQS]
50482
50395
-
Ser
GGA
[ENA]
¡û
>W1711006237
LQOE01000014
Bacillota
Lactococcus sp. DD01 [LQOE]
1805
1892
+
Ser
GGA
[ENA]
¡û
>W1711228313
LXWL01000005
Bacillota
Lactococcus garvieae [LXWL]
77439
77352
-
Ser
GGA
[ENA]
¡û
>W1711744865
MUIZ01000004
Bacillota
Lactococcus petauri 159469 [MUIZ]
101405
101492
+
Ser
GGA
[ENA]
¡û
>W1711942770
NBBK01000008
Bacillota
Lactococcus garvieae [NBBK]
213071
213158
+
Ser
GGA
[ENA]
¡û
>W131010422
AHYM01000005
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
43251
43164
-
Ser
GGA
[ENA]
¡û
>W131037507
AMFD01000007
Bacillota
Lactococcus garvieae I113 [AMFD]
98184
98097
-
Ser
GGA
[ENA]
¡û
>W131037568
AMFE01000063
Bacillota
Lactococcus garvieae Tac2 [AMFE]
43032
42945
-
Ser
GGA
[ENA]
¡û
>W131202467
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
874467
874380
-
Ser
GGA
[ENA]
¡û
>WENV180454916
OBXO01000135
[OBXO] human gut metagenome; faeces
13676
13763
+
Ser
GGA
[ENA]
¡û
>W141096244
AVFE01000064
Bacillota
Lactococcus garvieae TRF1 [AVFE]
4210
4123
-
Ser
GGA
[ENA]
¡û
>W141238096
BBJW01000019
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
43055
42968
-
Ser
GGA
[ENA]
¡û
>WENV182517961
OIWP01000048
[OIWP] human gut metagenome; faeces
23835
23922
+
Ser
GGA
[ENA]
¡û
>WENV182619556
OJKH01023598
[OJKH] metagenome; faeces
96
183
+
Ser
GGA
[ENA]
¡û
>WENV183180192
OLPH01092506
[OLPH] human gut metagenome; faeces
447
360
-
Ser
GGA
[ENA]
¡û
>WENV183276614
OLRZ01014074
[OLRZ] human gut metagenome; faeces
1246
1333
+
Ser
GGA
[ENA]
¡û
>WENV183511297
OMJG01000014
[OMJG] food metagenome; Cotija cheese
23835
23922
+
Ser
GGA
[ENA]
¡û
>WENV170547765
CXTS01000446
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
1316
1229
-
Ser
GGA
[ENA]
¡û
>WENV170549762
CXVH01002843
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
36
123
+
Ser
GGA
[ENA]
¡û
>WENV170549815
CXVI01001621
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
624
537
-
Ser
GGA
[ENA]
¡û
>C181001730
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1894903
1894990
+
Ser
GGA
-
¡û
>C191044517
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
710113
710200
+
Ser
GGA
-
¡û
>W1910583246
JXJV01000015
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
6172
6259
+
Ser
GGA
[ENA]
¡û
>W1910641584
LTDA01000026
Bacillota
Lactococcus garvieae KS1546 [LTDA]
165881
165794
-
Ser
GGA
[ENA]
¡û
>W1810907558
QVHV01000004
Bacillota
Lactococcus petauri AM13-9 [QVHV]
26059
26146
+
Ser
GGA
[ENA]
¡û
>W2010145319
BLXU01000005
Bacillota
Lactococcus garvieae lg38 [BLXU]
112993
113080
+
Ser
GGA
[ENA]
¡û
>W2010259175
CABJEF020000004
Bacillota
Lactococcus garvieae [CABJEF]
26059
26146
+
Ser
GGA
[ENA]
¡û
>W2010632758
JABTTD010000005
Bacillota
Lactococcus petauri LZys1 [JABTTD]
24013
24100
+
Ser
GGA
[ENA]
¡û
>W2010762964
JXJV01000015
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
6172
6259
+
Ser
GGA
[ENA]
¡û
>W2010786210
LTDA01000026
Bacillota
Lactococcus garvieae KS1546 [LTDA]
165881
165794
-
Ser
GGA
[ENA]
¡û
>W2011490940
RSFD01000034
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
4433
4520
+
Ser
GGA
[ENA]
¡û
>W2011543952
SDHG01000002
Bacillota
Lactococcus petauri DB43829 [SDHG]
350667
350580
-
Ser
GGA
[ENA]
¡û
>W2011544008
SDHH01000003
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
286301
286388
+
Ser
GGA
[ENA]
¡û
>W2011544051
SDHI01000001
Bacillota
Lactococcus petauri DB22928 [SDHI]
1328220
1328133
-
Ser
GGA
[ENA]
¡û
>W2011544106
SDHJ01000010
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
25574
25661
+
Ser
GGA
[ENA]
¡û
>W2011544151
SDHK01000007
Bacillota
Lactococcus petauri DB44798 [SDHK]
72027
71940
-
Ser
GGA
[ENA]
¡û
>W2011544211
SDHL01000006
Bacillota
Lactococcus petauri FISH1 [SDHL]
71905
71818
-
Ser
GGA
[ENA]
¡û
>W2011544260
SDHM01000004
Bacillota
Lactococcus petauri GRT2 [SDHM]
71394
71481
+
Ser
GGA
[ENA]
¡û
>W2011544302
SDHN01000004
Bacillota
Lactococcus garvieae CT2 [SDHN]
154924
154837
-
Ser
GGA
[ENA]
¡û
>W2011544353
SDHO01000003
Bacillota
Lactococcus garvieae FISHB [SDHO]
67955
67868
-
Ser
GGA
[ENA]
¡û
>W2011544401
SDHP01000003
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
287085
287172
+
Ser
GGA
[ENA]
¡û
>W2011544440
SDHQ01000002
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
154900
154813
-
Ser
GGA
[ENA]
¡û
>W2011602718
SIVY01000023
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
65091
65004
-
Ser
GGA
[ENA]
¡û
>W2012206261
VXKD01000014
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
6268
6355
+
Ser
GGA
[ENA]
¡û
>W2110068686
BOVO01000020
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
17454
17367
-
Ser
GGA
[ENA]
¡û
>W2110068720
BOVP01000003
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
199703
199790
+
Ser
GGA
[ENA]
¡û
>W2110344974
JADMXE010000010
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
43186
43099
-
Ser
GGA
[ENA]
¡û
>W2110368993
JADPGL010000004
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
191506
191419
-
Ser
GGA
[ENA]
¡û
>W2110369585
JADPHA010000003
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
193428
193341
-
Ser
GGA
[ENA]
¡û
>W2110437331
JAEOAS010000010
Bacillota
Lactococcus petauri H10 [JAEOAS]
30582
30669
+
Ser
GGA
[ENA]
¡û
>W2110583791
JAGYXD010000005
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
21253
21340
+
Ser
GGA
[ENA]
¡û
>W2110583839
JAGYXE010000010
Bacillota
Lactococcus petauri INF110 [JAGYXE]
16834
16921
+
Ser
GGA
[ENA]
¡û
>C211210928
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
1056569
1056656
+
Ser
GGA
-
¡û
>C211212752
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
1000906
1000819
-
Ser
GGA
-
¡û
>C211219735
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
1719715
1719802
+
Ser
GGA
-
¡û
>C211222013
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
1349650
1349563
-
Ser
GGA
-
¡û
>C211222310
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
1815399
1815486
+
Ser
GGA
-
¡û
>C211289068
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
1319459
1319372
-
Ser
GGA
-
¡û
>C211289084
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
687704
687791
+
Ser
GGA
-
¡û
>C211289185
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1334673
1334586
-
Ser
GGA
-
¡û
>C211289205
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
1895432
1895345
-
Ser
GGA
-
¡û
>C211289302
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
1456504
1456417
-
Ser
GGA
-
¡û
>C211289365
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
1011894
1011807
-
Ser
GGA
-
¡û
>C211408038
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
139516
139603
+
Ser
GGA
-
¡û
>C231024870
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
1307935
1307848
-
Ser
GGA
-
¡û
>C231034169
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
1483402
1483315
-
Ser
GGA
-
¡û
>W1510060232
CCXC01000002
Bacillota
Lactococcus garvieae M14 [CCXC]
365455
365368
-
Ser
GGA
[ENA]
¡û
>W1510060349
CCXF01000002
Bacillota
Lactococcus garvieae MT14 [CCXF]
365455
365368
-
Ser
GGA
[ENA]
¡û
>C231227718
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
1382610
1382523
-
Ser
GGA
-
¡û
>C231227775
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
1567961
1567874
-
Ser
GGA
-
¡û
>C231227836
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
1562496
1562409
-
Ser
GGA
-
¡û
>C231230555
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
1762671
1762584
-
Ser
GGA
-
¡û
>C231353110
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
1377995
1377908
-
Ser
GGA
-
¡û
>W2110761220
QSNN01000005
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
89522
89609
+
Ser
GGA
[ENA]
¡û
>C231519388
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
928675
928762
+
Ser
GGA
-
¡û
>C231519440
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
820276
820363
+
Ser
GGA
-
¡û
>C231628031
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
1460893
1460806
-
Ser
GGA
-
¡û
>W2110783075
WIVG01000015
Bacillota
Lactococcus garvieae EP01 [WIVG]
26422
26335
-
Ser
GGA
[ENA]
¡û
>C241103709
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1362156
1362069
-
Ser
GGA
-
¡û
>C241278531
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
1539325
1539238
-
Ser
GGA
-
¡û
>C242000024
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
1304520
1304433
-
Ser
GGA
-
¡û
>C11112687
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
691661
691748
+
Ser
GGA
[Ensembl]
¡û
>C11112747
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
709102
709189
+
Ser
GGA
[Ensembl]
¡û
>W1511314669
JPUJ01000006
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
19259
19346
+
Ser
GGA
[ENA]
¡û
>W11157456
AFCC01000022
Bacillota
Lactococcus garvieae 21881 [AFCC]
127
40
-
Ser
GGA
[ENA]
¡û
>W11157510
AFCD01000047
Bacillota
Lactococcus garvieae 8831 [AFCD]
21646
21559
-
Ser
GGA
[ENA]
¡û
>W11162760
AFHF01000014
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
103854
103767
-
Ser
GGA
[ENA]
¡û
>W121016349
AGQX01000015
Bacillota
Lactococcus garvieae TB25 [AGQX]
51637
51724
+
Ser
GGA
[ENA]
¡û
>W121016398
AGQY01000065
Bacillota
Lactococcus garvieae LG9 [AGQY]
3185
3272
+
Ser
GGA
[ENA]
¡û
>W121081215
AKFO01000017
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
20849
20936
+
Ser
GGA
[ENA]
¡û
>W1610856887
LQOE01000014
Bacillota
Lactococcus sp. DD01 [LQOE]
1805
1892
+
Ser
GGA
[ENA]
¡û
>W1611012230
LXWL01000005
Bacillota
Lactococcus garvieae [LXWL]
77439
77352
-
Ser
GGA
[ENA]
¡û
>WENV085194
BABB01013102
Gut microbiome of Human (healthy human sample In-A, Adult, Male)
129
219
+
Ser
GGA
[ENA]
>W1710568162
FOTJ01000001
Bacillota
Lactococcus garvieae [FOTJ]
441016
440929
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK