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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19317 (27 seq.)
>W1711071225
LSGP01000006
Bacillota
Anaerosporomusa subterranea [LSGP]
51030
50940
-
Ser
GCT
[ENA]
¡û
>W1711076457
LSLJ01000001
Bacillota
Sporomusa sphaeroides DSM 2875 [LSLJ]
78847
78937
+
Ser
GCT
[ENA]
¡û
>W131231382
AUIL01000001
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
43255
43345
+
Ser
GCT
[ENA]
¡û
>W131231481
AUIL01000107
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
1066
976
-
Ser
GCT
[ENA]
¡û
>W141074033
ASXP01000002
Bacillota
Sporomusa ovata DSM 2662 [ASXP]
648214
648304
+
Ser
GCT
[ENA]
¡û
>WENV183745938
POVV01002138
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
1187
1097
-
Ser
GCT
[ENA]
¡û
>WENV183746161
POVV01011846
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
778
688
-
Ser
GCT
[ENA]
¡û
>W1910200215
FCOW01000007
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
103689
103599
-
Ser
GCT
[ENA]
¡û
>W1910200286
FCOW01000062
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
442
532
+
Ser
GCT
[ENA]
¡û
>W1910638970
LSLK01000038
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
52508
52598
+
Ser
GCT
[ENA]
¡û
>W1910639048
LSLK01000157
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
1654
1564
-
Ser
GCT
[ENA]
¡û
>W1910639126
LSLL01000070
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
54858
54768
-
Ser
GCT
[ENA]
¡û
>W2010374430
FCOW01000007
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
103689
103599
-
Ser
GCT
[ENA]
¡û
>W2010374501
FCOW01000062
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
442
532
+
Ser
GCT
[ENA]
¡û
>W2010785327
LSLK01000038
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
52508
52598
+
Ser
GCT
[ENA]
¡û
>W2010785405
LSLK01000157
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
1654
1564
-
Ser
GCT
[ENA]
¡û
>W2010785483
LSLL01000070
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
54858
54768
-
Ser
GCT
[ENA]
¡û
>W2012080959
VLKC01000002
Bacillota
Sporomusa sp. KB1 [VLKC]
1988965
1989055
+
Ser
GCT
[ENA]
¡û
>W2110018284
BMBX01000014
Bacillota
Sporomusa sp. GT1 [BMBX]
101067
100977
-
Ser
GCT
[ENA]
¡û
>W2110602180
JAHGVE010000001
Bacillota
Pelorhabdus rhamnosifermentans BoRhaA [JAHGVE]
1455
1365
-
Ser
GCT
[ENA]
¡û
>W2110602200
JAHGVE010000005
Bacillota
Pelorhabdus rhamnosifermentans BoRhaA [JAHGVE]
144391
144301
-
Ser
GCT
[ENA]
¡û
>C241043608
CP036259
Bacillota
Sporomusa termitida DSM 4440 [CP036259]
4958145
4958235
+
Ser
GCT
-
¡û
>C241043624
CP036259
Bacillota
Sporomusa termitida DSM 4440 [CP036259]
3104156
3104066
-
Ser
GCT
-
¡û
>W1510586089
CTRP01000011
Bacillota
Sporomusa ovata An4 [CTRP]
43285
43375
+
Ser
GCT
[ENA]
¡û
>W1510586123
CTRP01000014
Bacillota
Sporomusa ovata An4 [CTRP]
397069
396979
-
Ser
GCT
[ENA]
¡û
>W1610910485
LSGP01000006
Bacillota
Anaerosporomusa subterranea [LSGP]
51030
50940
-
Ser
GCT
[ENA]
¡û
>W1710605834
FWXI01000015
Bacillota
Sporomusa malonica [FWXI]
45077
44987
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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