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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193205 (43 seq.)
>W1711491936
MKJZ01000011
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
87641
87717
+
Ile
GAT
[ENA]
¡û
>W1711492040
MKKB01000233
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
4899
4823
-
Ile
GAT
[ENA]
¡û
>W1711492237
MKKF01000027
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
9070
9146
+
Ile
GAT
[ENA]
¡û
>W1711664239
MQVT01000004
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
51027
51103
+
Ile
GAT
[ENA]
¡û
>W1711664301
MQVU01000005
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
96018
96094
+
Ile
GAT
[ENA]
¡û
>C171060463
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
2984896
2984970
+
Ile
GAT
-
¡û
>W131098113
AORC01000011
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
78671
78597
-
Ile
GAT
[ENA]
¡û
>W131217144
ATWM01000001
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
244833
244757
-
Ile
GAT
[ENA]
¡û
>WENV183721630
PDWJ01077835
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1031
1107
+
Ile
GAT
[ENA]
¢þ
>W141406685
JDYK01000018
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
52595
52521
-
Ile
GAT
[ENA]
¡û
>C181062012
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
1847104
1847178
+
Ile
GAT
-
¡û
>C181084679
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
3888799
3888725
-
Ile
GAT
-
¡û
>C181197159
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
2670995
2671071
+
Ile
GAT
-
¡û
>C191051346
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
615973
615899
-
Ile
GAT
-
¡û
>C191150891
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
14718
14794
+
Ile
GAT
-
¡û
>C191158361
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
14290
14366
+
Ile
GAT
-
¡û
>C191183654
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
15235
15311
+
Ile
GAT
-
¡û
>W09109302
ABUD01000002
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
49909
49833
-
Ile
GAT
[ENA]
¡û
>W1910442462
FWFG01000089
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
902
828
-
Ile
GAT
[ENA]
¡û
>W1910442567
FWFI01000009
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
106115
106041
-
Ile
GAT
[ENA]
¡û
>W1910498741
FXXB01000008
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
1562163
1562237
+
Ile
GAT
[ENA]
¡û
>W1911203296
NRGR01000023
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
98294
98368
+
Ile
GAT
[ENA]
¡û
>W1911203351
NRGS01000029
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
6499
6425
-
Ile
GAT
[ENA]
¡û
>W1911532891
OIWY01000001
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
171565
171491
-
Ile
GAT
[ENA]
¡û
>W1911752306
QWLM01000012
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
41849
41773
-
Ile
GAT
[ENA]
¡û
>W1810189353
PKIZ01000003
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
79680
79605
-
Ile
GAT
[ENA]
¡û
>W1810196873
PNFB01000003
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
18805
18731
-
Ile
GAT
[ENA]
¡û
>W1810587394
QFKX01000003
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
8017
7943
-
Ile
GAT
[ENA]
¡û
>W1810756676
QPGF01000009
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
6568
6494
-
Ile
GAT
[ENA]
¡û
>W1810756725
QPGG01000011
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
6825
6751
-
Ile
GAT
[ENA]
¡û
>W1810756848
QPGI01000026
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
65528
65602
+
Ile
GAT
[ENA]
¡û
>W1810756888
QPGJ01000026
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
99863
99937
+
Ile
GAT
[ENA]
¡û
>W1810756928
QPGK01000015
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
62359
62433
+
Ile
GAT
[ENA]
¡û
>W1810757112
QPGN01000002
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
32158
32084
-
Ile
GAT
[ENA]
¡û
>C10108034
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
11941
12017
+
Ile
GAT
[Ensembl]
¡û
>W11138445
AEIQ01000056
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
97027
97103
+
Ile
GAT
[ENA]
¡û
>W1511568111
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
3790821
3790897
+
Ile
GAT
[ENA]
¡û
>W11177011
AFYF01000034
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
83817
83893
+
Ile
GAT
[ENA]
¡û
>W11177833
AGBX01000001
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
777645
777571
-
Ile
GAT
[ENA]
¡û
>C161106441
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
2015345
2015419
+
Ile
GAT
-
¡û
>W1610051607
BBHA01000886
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
638
564
-
Ile
GAT
[ENA]
¡û
>W1710047985
BBHA01000886
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
638
564
-
Ile
GAT
[ENA]
¡û
>W1710610300
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
1341212
1341136
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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