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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193208 (113 seq.)
>W1710991664
LPXW01000031
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
244473
244547
+
Pro
CGG
[ENA]
¡û
>W1711066585
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
201375
201299
-
Pro
CGG
[ENA]
¡û
>W1711092552
LTEE01000069
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
353
277
-
Pro
CGG
[ENA]
¡û
>W1711093853
LTFJ01000013
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
253398
253474
+
Pro
CGG
[ENA]
¡û
>W1711096151
LTHM01000063
Actinomycetota
Brevibacterium sp. HMSC063G07 [LTHM]
264435
264359
-
Pro
CGG
[ENA]
¡û
>W1711096280
LTHP01000125
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
16376
16451
+
Pro
CGG
[ENA]
¡û
>W1711096295
LTHQ01000013
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
50361
50285
-
Pro
CGG
[ENA]
¡û
>W1711097558
LTIU01000034
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
42416
42340
-
Pro
CGG
[ENA]
¡û
>W1711098021
LTJF01000012
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
389971
390047
+
Pro
CGG
[ENA]
¡û
>W1711098574
LTJR01000029
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
39205
39129
-
Pro
CGG
[ENA]
¡û
>W1711099343
LTKK01000024
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
6819
6895
+
Pro
CGG
[ENA]
¡û
>W1711102264
LTNP01000012
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
24937
25013
+
Pro
CGG
[ENA]
¡û
>W1711102297
LTNQ01000004
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
73579
73655
+
Pro
CGG
[ENA]
¡û
>W1711102354
LTNR01000017
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
191
115
-
Pro
CGG
[ENA]
¡û
>W1711102404
LTNS01000005
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
24863
24939
+
Pro
CGG
[ENA]
¡û
>W1711102464
LTNT01000006
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
16330
16406
+
Pro
CGG
[ENA]
¡û
>W1711102551
LTNU01000068
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
19497
19421
-
Pro
CGG
[ENA]
¡û
>W1711102559
LTNV01000007
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
309
233
-
Pro
CGG
[ENA]
¡û
>W1711103275
LTOO01000017
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
19889
19965
+
Pro
CGG
[ENA]
¡û
>W1711103463
LTOS01000043
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
31695
31619
-
Pro
CGG
[ENA]
¡û
>W1711107016
LTSJ01000034
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
142112
142188
+
Pro
CGG
[ENA]
¡û
>W1711110053
LTVE01000024
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
36897
36821
-
Pro
CGG
[ENA]
¡û
>W1711113450
LTYH01000023
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
16145
16221
+
Pro
CGG
[ENA]
¡û
>W1711114788
LTZP01000048
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
17935
18011
+
Pro
CGG
[ENA]
¡û
>W1711114850
LTZQ01000021
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
16115
16191
+
Pro
CGG
[ENA]
¡û
>W1711114950
LTZS01000048
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
28835
28911
+
Pro
CGG
[ENA]
¡û
>W1711169835
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
765932
765858
-
Pro
CGG
[ENA]
¡û
>W1711185840
LWNS01000047
Actinomycetota
Brevibacterium sp. HMSC08F02 [LWNS]
234024
233950
-
Pro
CGG
[ENA]
¡û
>W1711187110
LWOU01000006
Actinomycetota
Brevibacterium sp. HMSC24B04 [LWOU]
20000
19926
-
Pro
CGG
[ENA]
¡û
>W1711187198
LWOW01000030
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
26327
26401
+
Pro
CGG
[ENA]
¡û
>W1711187757
LWPT01000043
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
19999
20075
+
Pro
CGG
[ENA]
¡û
>W1711187912
LWPW01000097
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
19299
19375
+
Pro
CGG
[ENA]
¡û
>W1711507482
MKXS01000005
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
205778
205702
-
Pro
CGG
[ENA]
¡û
>W131219765
ATYV01000003
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
65229
65153
-
Pro
CGG
[ENA]
¡û
>W1711724034
MTPT01000047
Actinomycetota
Corynebacterium amycolatum [MTPT]
602
526
-
Pro
CGG
[ENA]
¡û
>C171002060
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
173455
173379
-
Pro
CGG
-
¡û
>C171068127
CP017812
Actinomycetota
Boudabousia tangfeifanii VUL4_3 [CP017812]
178589
178513
-
Pro
CGG
-
¡û
>WENV180550861
OCJC01005413
[OCJC] human gut metagenome; Infant 1 DOL 6 skin
298
222
-
Pro
CGG
[ENA]
¢þ
>WENV180711583
ODFP01005292
[ODFP] human metagenome; G_DNA_Anterior nares
238
162
-
Pro
CGG
[ENA]
¢þ
>WENV180749898
ODHS01000086
[ODHS] human metagenome; G_DNA_Supragingival plaque
20642
20566
-
Pro
CGG
[ENA]
¢þ
>WENV180765499
ODIC01000008
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
181216
181140
-
Pro
CGG
[ENA]
¢þ
>WENV180878651
ODLX01002223
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
75
1
-
Pro
CGG
[ENA]
¢þ
>WENV180912869
ODSO01000014
[ODSO] human metagenome; G_DNA_Anterior nares
757
681
-
Pro
CGG
[ENA]
¢þ
>WENV180913496
ODSU01007195
[ODSU] human metagenome; G_DNA_Anterior nares
458
382
-
Pro
CGG
[ENA]
¢þ
>WENV180918059
ODTF01000054
[ODTF] human metagenome; G_DNA_Anterior nares
32439
32515
+
Pro
CGG
[ENA]
¢þ
>WENV180933288
ODTR01000010
[ODTR] human metagenome; G_DNA_Supragingival plaque
2738
2662
-
Pro
CGG
[ENA]
¢þ
>WENV180940249
ODTY01003539
[ODTY] human metagenome; G_DNA_Anterior nares
156
232
+
Pro
CGG
[ENA]
¢þ
>WENV180972560
ODUV01011054
[ODUV] human metagenome; G_DNA_Anterior nares
267
343
+
Pro
CGG
[ENA]
¢þ
>WENV180984417
ODVG01000390
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
1007
1083
+
Pro
CGG
[ENA]
¢þ
>WENV180984538
ODVH01000140
[ODVH] human metagenome; G_DNA_Anterior nares
3235
3311
+
Pro
CGG
[ENA]
¢þ
>WENV181007031
ODWC01006165
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
866
790
-
Pro
CGG
[ENA]
¢þ
>WENV181025023
ODWY01000101
[ODWY] human metagenome; G_DNA_Anterior nares
9055
9131
+
Pro
CGG
[ENA]
¢þ
>WENV181030375
ODXG01010356
[ODXG] human metagenome; G_DNA_Anterior nares
87
163
+
Pro
CGG
[ENA]
¢þ
>WENV181032342
ODXM01000379
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
443
367
-
Pro
CGG
[ENA]
¢þ
>WENV181040352
ODXR01000110
[ODXR] human metagenome; G_DNA_Anterior nares
1214
1290
+
Pro
CGG
[ENA]
¢þ
>WENV181123343
OEFP01000023
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
32379
32455
+
Pro
CGG
[ENA]
¢þ
>WENV181131050
OEFZ01000769
[OEFZ] human metagenome; G_DNA_Anterior nares
3
79
+
Pro
CGG
[ENA]
¢þ
>WENV181131660
OEGD01000361
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
322
398
+
Pro
CGG
[ENA]
¢þ
>WENV181212264
OFBN01002807
[OFBN] metagenome; hydrothermal vent
492
416
-
Pro
CGG
[ENA]
¢þ
>WENV181212577
OFBR01002748
[OFBR] metagenome; hydrothermal vent
492
416
-
Pro
CGG
[ENA]
¢þ
>WENV181212736
OFBT01002802
[OFBT] metagenome; hydrothermal vent
492
416
-
Pro
CGG
[ENA]
¢þ
>WENV181326394
OFLL01000262
[OFLL] metagenome; faeces
5934
5858
-
Pro
CGG
[ENA]
¢þ
>W141243118
CAJD01000019
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
366
292
-
Pro
CGG
[ENA]
¡û
>WENV182628979
OJKR01000437
[OJKR] metagenome; surface
6830
6906
+
Pro
CGG
[ENA]
¢þ
>WENV182629808
OJKV01000011
[OJKV] metagenome; surface
28158
28082
-
Pro
CGG
[ENA]
¢þ
>WENV182636242
OJKZ01001369
[OJKZ] metagenome; surface
1658
1582
-
Pro
CGG
[ENA]
¢þ
>WENV182640224
OJLB01001227
[OJLB] metagenome; surface
866
790
-
Pro
CGG
[ENA]
¢þ
>WENV182641271
OJLG01000008
[OJLG] metagenome; surface
57418
57342
-
Pro
CGG
[ENA]
¢þ
>WENV182641831
OJLK01002299
[OJLK] metagenome; surface
87
13
-
Pro
CGG
[ENA]
¢þ
>WENV182643453
OJLU01014885
[OJLU] metagenome; surface
224
300
+
Pro
CGG
[ENA]
¢þ
>WENV182643710
OJLW01000606
[OJLW] metagenome; surface
16120
16044
-
Pro
CGG
[ENA]
¢þ
>WENV182645227
OJLY01005452
[OJLY] metagenome; surface
2488
2414
-
Pro
CGG
[ENA]
¢þ
>WENV182645322
OJLY01009128
[OJLY] metagenome; surface
1989
2065
+
Pro
CGG
[ENA]
¢þ
>WENV182671676
OJNM01001125
[OJNM] metagenome; surface
6676
6752
+
Pro
CGG
[ENA]
¢þ
>WENV182803000
OJUH01000050
[OJUH] human gut metagenome; human gut
3807
3881
+
Pro
CGG
[ENA]
¢þ
>WENV182820769
OKAP01000085
[OKAP] human gut metagenome; human gut
19411
19485
+
Pro
CGG
[ENA]
¢þ
>WENV182828307
OKDF01000873
[OKDF] human gut metagenome; human gut
2050
1974
-
Pro
CGG
[ENA]
¢þ
>WENV182835567
OKFO01000141
[OKFO] human gut metagenome; human gut
19945
19871
-
Pro
CGG
[ENA]
¢þ
>WENV182837573
OKGJ01000545
[OKGJ] human gut metagenome; human gut
1766
1842
+
Pro
CGG
[ENA]
¢þ
>WENV182839761
OKHF01002057
[OKHF] human gut metagenome; human gut
1040
1116
+
Pro
CGG
[ENA]
¢þ
>WENV183087806
OLJO01002195
[OLJO] human gut metagenome; human gut
52
128
+
Pro
CGG
[ENA]
¢þ
>WENV183508617
OMHE01005324
[OMHE] human oral metagenome; human oral
490
564
+
Pro
CGG
[ENA]
¢þ
>WENV170686621
LFRM01155355
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1046
1122
+
Pro
CGG
[ENA]
¢þ
>C181212699
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
342315
342241
-
Pro
CGG
-
¡û
>C191094590
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
1839548
1839624
+
Pro
CGG
-
¡û
>W09114662
ABZU01000018
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
30841
30765
-
Pro
CGG
[ENA]
¡û
>W1910340084
FTLO01000014
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
23105
23181
+
Pro
CGG
[ENA]
¡û
>C09103337
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
2341680
2341756
+
Pro
CGG
[Ensembl]
¡û
>W1911596514
PNHF01000019
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
9062
9138
+
Pro
CGG
[ENA]
¡û
>W1911597402
PNHX01000005
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
30338
30412
+
Pro
CGG
[ENA]
¡û
>W1911653703
QDIE01000032
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
1499
1425
-
Pro
CGG
[ENA]
¡û
>W1810185991
PKGO01000001
Actinomycetota
Brevibacterium ravenspurgense UMB0426 [PKGO]
238790
238864
+
Pro
CGG
[ENA]
¡û
>W1810187628
PKHS01000007
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
101528
101452
-
Pro
CGG
[ENA]
¡û
>W1810187671
PKHT01000011
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
25075
25151
+
Pro
CGG
[ENA]
¡û
>W1810192527
PKMD01000005
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
20138
20214
+
Pro
CGG
[ENA]
¡û
>W1810192587
PKME01000011
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
20165
20241
+
Pro
CGG
[ENA]
¡û
>C151037575
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
1225642
1225566
-
Pro
CGG
[Ensembl]
¡û
>C151039885
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1445565
1445489
-
Pro
CGG
[Ensembl]
¡û
>C151094708
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
1334605
1334529
-
Pro
CGG
-
¡û
>C10100458
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
1868353
1868427
+
Pro
CGG
[Ensembl]
¡û
>W1511351368
JRNE01000058
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
59873
59949
+
Pro
CGG
[ENA]
¡û
>W1511457792
JVIP01000012
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
321
245
-
Pro
CGG
[ENA]
¡û
>W1511461082
JVMD01000023
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
195356
195280
-
Pro
CGG
[ENA]
¡û
>W1511464295
JVPT01000014
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
321
245
-
Pro
CGG
[ENA]
¡û
>W1511476405
JWEP01000015
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
16287
16363
+
Pro
CGG
[ENA]
¡û
>W1511523839
JYCR01000006
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
159326
159402
+
Pro
CGG
[ENA]
¡û
>W1511523949
JYDD01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
16905
16829
-
Pro
CGG
[ENA]
¡û
>W1610068213
BCRD01000004
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
124191
124115
-
Pro
CGG
[ENA]
¡û
>W1610846279
LPXW01000031
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
244473
244547
+
Pro
CGG
[ENA]
¡û
>W1610846338
LPXX01000015
Actinomycetota
Brevibacterium ravenspurgense 5401308 = CCUG 53855 [LPXX]
490
416
-
Pro
CGG
[ENA]
¡û
>W1610907155
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
201375
201299
-
Pro
CGG
[ENA]
¡û
>W1610979032
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
765932
765858
-
Pro
CGG
[ENA]
¡û
>W1710065586
BCRD01000004
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
124191
124115
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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