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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193550 (12 seq.)
>WENV180515201
OCHC01000003
[OCHC] human gut metagenome; human gut
71689
71764
+
Arg
TCT
[ENA]
¡û
>WENV181512545
OGGT01012467
[OGGT] metagenome; Human gut stool
599
524
-
Arg
TCT
[ENA]
¡û
>WENV181518413
OGHA01013967
[OGHA] metagenome; Human gut stool
930
1005
+
Arg
TCT
[ENA]
¡û
>WENV181670366
OGOM01004092
[OGOM] human gut metagenome; faeces
3632
3557
-
Arg
TCT
[ENA]
¡û
>WENV181763447
OGQX01006029
[OGQX] human gut metagenome; faeces
3632
3557
-
Arg
TCT
[ENA]
¡û
>WENV183126798
OLNY01039266
[OLNY] human gut metagenome; faeces
831
756
-
Arg
TCT
[ENA]
¡û
>WENV183159559
OLOU01004402
[OLOU] human gut metagenome; faeces
1420
1495
+
Arg
TCT
[ENA]
¡û
>WENV183613609
OODU01006993
[OODU] human gut metagenome; human gut
3841
3766
-
Arg
TCT
[ENA]
¡û
>WENV183767635
PPYE01379699
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1005
930
-
Arg
TCT
[ENA]
¡û
>WENV170057992
CDZG01059548
[CDZG] gut metagenome; human stools
794
719
-
Arg
TCT
[ENA]
¡û
>WENV170058899
CDZH01026747
[CDZH] gut metagenome; human stools
2933
3008
+
Arg
TCT
[ENA]
¡û
>WENV170061143
CDZI01036274
[CDZI] gut metagenome; human stools
487
562
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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