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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193605 (15 seq.)
>W1711312086
MASI01000006
Alphaproteobacteria
Methyloligella halotolerans [MASI]
35086
35010
-
Met
CAT
[ENA]
¡û
>W1711341785
MCGG01000031
Alphaproteobacteria
Magnetovibrio blakemorei [MCGG]
17098
17174
+
Met
CAT
[ENA]
¡û
>WENV181380371
OFRD01068128
[OFRD] wastewater metagenome; Exp Tend CN 100WW
141
65
-
Ile2
CAT
[ENA]
¡û
>WENV183627661
OOGL01024801
[OOGL] marine metagenome; sea ice
865
789
-
Ile2
CAT
[ENA]
¡û
>WENV183679700
ORMF010096549
[ORMF] groundwater metagenome; groundwater
1304
1228
-
Ile2
CAT
[ENA]
¡û
>WENV170204168
CEPS01155501
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
599
675
+
Met
CAT
[ENA]
¡û
>WENV170299312
CESG01025082
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1067
991
-
Met
CAT
[ENA]
¡û
>WENV170664123
JYMV01013023
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
3136
3060
-
Met
CAT
[ENA]
¡û
>WENV170664280
JYMV01014722
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
105
29
-
Met
CAT
[ENA]
¡û
>WENV170664904
JYMV01020869
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
4604
4528
-
Met
CAT
[ENA]
¡û
>C191081618
CP031841
Alphaproteobacteria
Breoghania sp. L-A4 [CP031841]
3760757
3760681
-
Met
CAT
-
¡û
>C211031002
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
1959146
1959222
+
Ile2
CAT
-
¡û
>C241250149
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
4036418
4036494
+
Ile2
CAT
-
¡û
>C241250270
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
1297056
1296980
-
Ile2
CAT
-
¡û
>C241250277
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
754135
754211
+
Ile2
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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