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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193665 (11 seq.)
>WENV180256472
OBEQ010821877
[OBEQ] groundwater metagenome; groundwater
1538
1463
-
Met
CAT
[ENA]
¡û
>WENV180256997
OBEQ010870813
[OBEQ] groundwater metagenome; groundwater
1799
1726
-
Met
CAT
[ENA]
¡û
>WENV180259717
OBEQ011132045
[OBEQ] groundwater metagenome; groundwater
15700
15625
-
Met
CAT
[ENA]
¡û
>WENV180260837
OBEQ011236770
[OBEQ] groundwater metagenome; groundwater
1078
1151
+
Met
CAT
[ENA]
¡û
>WENV180262081
OBEQ011354915
[OBEQ] groundwater metagenome; groundwater
2615
2542
-
Met
CAT
[ENA]
¡û
>WENV180263111
OBEQ011445387
[OBEQ] groundwater metagenome; groundwater
196
123
-
Met
CAT
[ENA]
¡û
>WENV180263275
OBEQ011460909
[OBEQ] groundwater metagenome; groundwater
6321
6395
+
Met
CAT
[ENA]
¡û
>WENV183680547
ORMF010196244
[ORMF] groundwater metagenome; groundwater
11530
11605
+
Met
CAT
[ENA]
¡û
>WENV183680991
ORMF010248602
[ORMF] groundwater metagenome; groundwater
83
10
-
Met
CAT
[ENA]
¡û
>WENV183689755
ORMF011488138
[ORMF] groundwater metagenome; groundwater
1033
958
-
Met
CAT
[ENA]
¡û
>WENV183691292
ORMF011736568
[ORMF] groundwater metagenome; groundwater
327
254
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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