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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194064 (92 seq.)
>W1710926349
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
48727
48651
-
Ile
GAT
[ENA]
¡û
>W1711462834
MJIE01000001
Bacillota
Hornefia porci 1968/3/10 [MJIE]
2322621
2322697
+
Ile
GAT
[ENA]
¡û
>C171059799
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3236677
3236753
+
Ile
GAT
-
¡û
>C171059809
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3624622
3624698
+
Ile
GAT
-
¡û
>C171059812
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3951876
3951952
+
Ile
GAT
-
¡û
>C171059850
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2743335
2743259
-
Ile
GAT
-
¡û
>C171059907
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
618926
618850
-
Ile
GAT
-
¡û
>WENV180198278
OBAC01020042
[OBAC] human gut metagenome; ENVO:feces
33
109
+
Ile
GAT
[ENA]
¢þ
>WENV180326577
OBKS01106865
[OBKS] human gut metagenome; human gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180709567
ODFJ01150337
[ODFJ] human metagenome; G_DNA_Tongue dorsum
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV180719972
ODGJ01011823
[ODGJ] human metagenome; G_DNA_Tongue dorsum
84
160
+
Ile
GAT
[ENA]
¢þ
>WENV180725181
ODGR01015424
[ODGR] human metagenome; G_DNA_Tongue dorsum
851
775
-
Ile
GAT
[ENA]
¢þ
>WENV180748480
ODHN01221073
[ODHN] human metagenome; G_DNA_Stool
53
129
+
Ile
GAT
[ENA]
¢þ
>WENV180763906
ODIA01008592
[ODIA] human metagenome; G_DNA_Tongue dorsum
2270
2194
-
Ile
GAT
[ENA]
¢þ
>WENV180769397
ODIG01064567
[ODIG] human metagenome; G_DNA_Tongue dorsum
645
721
+
Ile
GAT
[ENA]
¢þ
>WENV180775923
ODIK01007846
[ODIK] human metagenome; G_DNA_Tongue dorsum
508
584
+
Ile
GAT
[ENA]
¢þ
>WENV180775968
ODIK01010007
[ODIK] human metagenome; G_DNA_Tongue dorsum
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV180790432
ODIT01012526
[ODIT] human metagenome; G_DNA_Tongue dorsum
2054
1978
-
Ile
GAT
[ENA]
¢þ
>WENV180793423
ODIW01020778
[ODIW] human metagenome; G_DNA_Tongue dorsum
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV180802795
ODJE01009666
[ODJE] human metagenome; G_DNA_Tongue dorsum
2270
2194
-
Ile
GAT
[ENA]
¢þ
>WENV180816702
ODJP01043744
[ODJP] human metagenome; G_DNA_Tongue dorsum
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV180818520
ODJQ01032335
[ODJQ] human metagenome; G_DNA_Stool
900
824
-
Ile
GAT
[ENA]
¢þ
>WENV180861753
ODLE01010898
[ODLE] human metagenome; G_DNA_Tongue dorsum
2292
2216
-
Ile
GAT
[ENA]
¢þ
>WENV180866934
ODLJ01181273
[ODLJ] human metagenome; G_DNA_Tongue dorsum
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV180871300
ODLN01037709
[ODLN] human metagenome; G_DNA_Stool
84
160
+
Ile
GAT
[ENA]
¢þ
>WENV180873614
ODLP01012866
[ODLP] human metagenome; G_DNA_Tongue dorsum
502
578
+
Ile
GAT
[ENA]
¢þ
>WENV180875310
ODLQ01085965
[ODLQ] human metagenome; G_DNA_Tongue dorsum
191
267
+
Ile
GAT
[ENA]
¢þ
>WENV180880172
ODLZ01009452
[ODLZ] human metagenome; G_DNA_Tongue dorsum
502
578
+
Ile
GAT
[ENA]
¢þ
>WENV180883516
ODMC01006841
[ODMC] human metagenome; G_DNA_Tongue dorsum
2597
2521
-
Ile
GAT
[ENA]
¢þ
>WENV180917418
ODTD01022432
[ODTD] human metagenome; G_DNA_Tongue dorsum
864
788
-
Ile
GAT
[ENA]
¢þ
>WENV180920549
ODTH01009325
[ODTH] human metagenome; G_DNA_Tongue dorsum
2270
2194
-
Ile
GAT
[ENA]
¢þ
>WENV180931908
ODTP01014696
[ODTP] human metagenome; G_DNA_Tongue dorsum
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV180953135
ODUI01010428
[ODUI] human metagenome; G_DNA_Tongue dorsum
1994
1918
-
Ile
GAT
[ENA]
¢þ
>WENV180959532
ODUM01001096
[ODUM] human metagenome; G_DNA_Tongue dorsum
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV180968513
ODUT01032087
[ODUT] human metagenome; G_DNA_Tongue dorsum
851
775
-
Ile
GAT
[ENA]
¢þ
>WENV180990893
ODVN01007842
[ODVN] human metagenome; G_DNA_Tongue dorsum
515
591
+
Ile
GAT
[ENA]
¢þ
>WENV180993880
ODVQ01013322
[ODVQ] human metagenome; G_DNA_Stool
2138
2062
-
Ile
GAT
[ENA]
¢þ
>WENV181016998
ODWR01017376
[ODWR] human metagenome; G_DNA_Tongue dorsum
1400
1324
-
Ile
GAT
[ENA]
¢þ
>WENV181033980
ODXN01048146
[ODXN] human metagenome; G_DNA_Tongue dorsum
502
578
+
Ile
GAT
[ENA]
¢þ
>WENV181041830
ODXS01052631
[ODXS] human metagenome; G_DNA_Tongue dorsum
513
589
+
Ile
GAT
[ENA]
¢þ
>WENV181059727
ODYM01007913
[ODYM] human metagenome; G_DNA_Tongue dorsum
1972
1896
-
Ile
GAT
[ENA]
¢þ
>WENV181064794
ODYP01101239
[ODYP] human metagenome; G_DNA_Supragingival plaque
424
348
-
Ile
GAT
[ENA]
¢þ
>WENV181080422
OEAS01046772
[OEAS] human metagenome; G_DNA_Supragingival plaque
44
120
+
Ile
GAT
[ENA]
¢þ
>WENV181087705
OEAY01133803
[OEAY] human metagenome; G_DNA_Tongue dorsum
95
171
+
Ile
GAT
[ENA]
¢þ
>WENV181096484
OEBY01163660
[OEBY] human metagenome; G_DNA_Tongue dorsum
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV181102714
OECT01008442
[OECT] human metagenome; G_DNA_Tongue dorsum
2608
2532
-
Ile
GAT
[ENA]
¢þ
>WENV181106285
OEED01081873
[OEED] human metagenome; G_DNA_Tongue dorsum
246
322
+
Ile
GAT
[ENA]
¢þ
>WENV181129508
OEFX01031284
[OEFX] human metagenome; G_DNA_Tongue dorsum
212
136
-
Ile
GAT
[ENA]
¢þ
>WENV181130540
OEFY01022311
[OEFY] human metagenome; G_DNA_Throat
842
766
-
Ile
GAT
[ENA]
¢þ
>WENV181136584
OEGI01015272
[OEGI] human metagenome; G_DNA_Supragingival plaque
800
724
-
Ile
GAT
[ENA]
¢þ
>WENV181141513
OEGT01006607
[OEGT] human metagenome; G_DNA_Throat
623
699
+
Ile
GAT
[ENA]
¢þ
>WENV181151447
OEHW01053571
[OEHW] human metagenome; G_DNA_Tongue dorsum
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV181176445
OEJR01004314
[OEJR] human metagenome; G_DNA_Saliva
508
584
+
Ile
GAT
[ENA]
¢þ
>WENV181291636
OFHB01090397
[OFHB] mouse gut metagenome; faeces
9
85
+
Ile
GAT
[ENA]
¢þ
>WENV181723497
OGPW01007539
[OGPW] human gut metagenome; faeces
53
129
+
Ile
GAT
[ENA]
¢þ
>WENV181781381
OGRJ01052838
[OGRJ] human gut metagenome; faeces
120
196
+
Ile
GAT
[ENA]
¢þ
>WENV181883719
OGXI01010211
[OGXI] human gut metagenome; faeces
3952
3876
-
Ile
GAT
[ENA]
¢þ
>WENV181895973
OGXR01075487
[OGXR] human gut metagenome; faeces
624
548
-
Ile
GAT
[ENA]
¢þ
>WENV181989744
OHAO01039282
[OHAO] human gut metagenome; faeces
293
369
+
Ile
GAT
[ENA]
¢þ
>WENV182072482
OHFM01064556
[OHFM] human gut metagenome; feces
424
348
-
Ile
GAT
[ENA]
¢þ
>WENV182260106
OHTI01025365
[OHTI] human gut metagenome; feces
34
110
+
Ile
GAT
[ENA]
¢þ
>WENV182796705
OJSQ01061067
[OJSQ] human gut metagenome; human gut
120
196
+
Ile
GAT
[ENA]
¢þ
>WENV182874599
OKRW01017007
[OKRW] human gut metagenome; faeces
86
162
+
Ile
GAT
[ENA]
¢þ
>W141291755
JATQ01000012
Bacillota
[Eubacterium] sulci ATCC 35585 [JATQ]
57
133
+
Ile
GAT
[ENA]
¡û
>WENV183064411
OLIH01006046
[OLIH] metagenome; faeces
506
430
-
Ile
GAT
[ENA]
¢þ
>WENV183090035
OLJW01043190
[OLJW] human gut metagenome; human gut
813
737
-
Ile
GAT
[ENA]
¢þ
>WENV183187389
OLPO01016292
[OLPO] human gut metagenome; faeces
86
162
+
Ile
GAT
[ENA]
¢þ
>WENV183266960
OLRT01022944
[OLRT] human gut metagenome; faeces
1056
980
-
Ile
GAT
[ENA]
¢þ
>WENV183273693
OLRX01029624
[OLRX] human gut metagenome; faeces
1040
964
-
Ile
GAT
[ENA]
¢þ
>WENV183345494
OLWR01001749
[OLWR] human gut metagenome; feces
8830
8754
-
Ile
GAT
[ENA]
¢þ
>WENV183372375
OLXW01009053
[OLXW] human gut metagenome; feces
2395
2319
-
Ile
GAT
[ENA]
¢þ
>WENV183426564
OMBL01035562
[OMBL] human gut metagenome; feces
54
130
+
Ile
GAT
[ENA]
¢þ
>WENV183445534
OMCP01033416
[OMCP] human gut metagenome; feces
415
339
-
Ile
GAT
[ENA]
¢þ
>WENV183720387
PDWJ01033227
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
659
735
+
Ile
GAT
[ENA]
¢þ
>WENV183755853
PPYE01114397
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2270
2194
-
Ile
GAT
[ENA]
¢þ
>WENV170978937
MTKZ01067946
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2254
2178
-
Ile
GAT
[ENA]
¢þ
>C181147952
CP027228
Bacillota
Mogibacterium diversum CCUG 47132 [CP027228]
389387
389463
+
Ile
GAT
-
¡û
>W141563645
JIAD01000001
Bacillota
Eubacterium sp. AB3007 [JIAD]
252500
252576
+
Ile
GAT
[ENA]
¡û
>W1810721371
QNRX01000046
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
275
199
-
Ile
GAT
[ENA]
¡û
>W1510725332
CXYX01000010
Bacillota
Inediibacterium massiliense mt12 [CXYX]
286
210
-
Ile
GAT
[ENA]
¡û
>W1510725338
CXYX01000011
Bacillota
Inediibacterium massiliense mt12 [CXYX]
302
226
-
Ile
GAT
[ENA]
¡û
>W1510725348
CXYX01000013
Bacillota
Inediibacterium massiliense mt12 [CXYX]
272463
272539
+
Ile
GAT
[ENA]
¡û
>W1510725373
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1178
1254
+
Ile
GAT
[ENA]
¡û
>W1510725401
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1635101
1635025
-
Ile
GAT
[ENA]
¡û
>W1511579320
LARB01000618
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
236
312
+
Ile
GAT
[ENA]
¡û
>W1511580031
LARI01000045
Bacillota
Carnobacterium sp. N15.MGS-251 [LARI]
309
385
+
Ile
GAT
[ENA]
¡û
>W1610501825
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1337021
1337097
+
Ile
GAT
[ENA]
¡û
>W1610783842
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
48727
48651
-
Ile
GAT
[ENA]
¡û
>W1710495295
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1337021
1337097
+
Ile
GAT
[ENA]
¡û
>W1710560464
FONK01000007
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
115391
115467
+
Ile
GAT
[ENA]
¡û
>W1710560490
FONK01000013
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
257
181
-
Ile
GAT
[ENA]
¡û
>W1710589060
FQZV01000020
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
69369
69293
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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