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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194107 (30 seq.)
>W131224817
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
142695
142771
+
Met
CAT
[ENA]
¡û
>W131224818
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
142929
143005
+
Met
CAT
[ENA]
¡û
>W131224844
AUDC01000009
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
102161
102237
+
Met
CAT
[ENA]
¡û
>W131224845
AUDC01000009
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
102399
102475
+
Met
CAT
[ENA]
¡û
>C008062
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
1728025
1728101
+
Met
CAT
[Ensembl]
¡û
>C008163
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
1740229
1740153
-
Met
CAT
[Ensembl]
¡û
>WENV180317356
OBKJ01127527
[OBKJ] metagenome; hydrothermal vent
176
100
-
Met
CAT
[ENA]
¢þ
>WENV181208712
OFBC01002244
[OFBC] metagenome; hydrothermal vent
1687
1611
-
Met
CAT
[ENA]
¢þ
>WENV183747387
PPCM01001481
[PPCM] marine sediment metagenome; marine sediment
10489
10413
-
Met
CAT
[ENA]
¢þ
>WENV183747388
PPCM01001481
[PPCM] marine sediment metagenome; marine sediment
10244
10168
-
Met
CAT
[ENA]
¢þ
>WENV183747461
PPCM01002578
[PPCM] marine sediment metagenome; marine sediment
297
221
-
Met
CAT
[ENA]
¢þ
>WENV170645384
JMSV01001995
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
280
204
-
Met
CAT
[ENA]
¢þ
>W141779023
JONL01000007
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
38696
38620
-
Met
CAT
[ENA]
¡û
>W09106206
AATW01000001
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
248262
248338
+
Met
CAT
[ENA]
¡û
>W09134049
ACQX01000001
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
346008
346084
+
Met
CAT
[ENA]
¡û
>W1910182264
BJMT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
171129
171053
-
Met
CAT
[ENA]
¡û
>C141011916
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2785999
2786075
+
Met
CAT
-
¡û
>C141011917
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2786233
2786309
+
Met
CAT
-
¡û
>C11107430
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
1842989
1843065
+
Met
CAT
[Ensembl]
¡û
>C131018098
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2785999
2786075
+
Met
CAT
[Ensembl]
¡û
>C131018099
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2786233
2786309
+
Met
CAT
[Ensembl]
¡û
>W1610550406
JXMS01000001
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
168489
168413
-
Met
CAT
[ENA]
¡û
>W1610550418
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125549
125625
+
Met
CAT
[ENA]
¡û
>W1610550419
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125662
125738
+
Met
CAT
[ENA]
¡û
>W1610550420
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125775
125851
+
Met
CAT
[ENA]
¡û
>W1610550421
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125888
125964
+
Met
CAT
[ENA]
¡û
>W1610550422
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
126001
126077
+
Met
CAT
[ENA]
¡û
>W1610550423
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
126114
126190
+
Met
CAT
[ENA]
¡û
>W1710520975
FNGA01000003
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
668356
668432
+
Met
CAT
[ENA]
¡û
>W1710593290
FRDI01000003
Thermodesulfobacteriota
Desulfovibrio litoralis DSM 11393 [FRDI]
397031
397107
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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