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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194265 (140 seq.)
>W1711090831
LTAY01000059
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
188087
188163
+
Met
CAT
[ENA]
¡û
>W1711090834
LTAY01000059
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
188383
188459
+
Met
CAT
[ENA]
¡û
>W1711308463
MAPZ01000024
Bacillota
Clostridium paraputrificum [MAPZ]
178106
178182
+
Met
CAT
[ENA]
¡û
>W131044126
AMQH01000008
Bacillota
Clostridium tunisiense TJ [AMQH]
530
454
-
Met
CAT
[ENA]
¡û
>W131232273
AUJC01000009
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
18624
18548
-
Met
CAT
[ENA]
¡û
>W1711791707
MWJC01000017
Bacillota
Clostridium botulinum [MWJC]
24450
24374
-
Met
CAT
[ENA]
¡û
>W1711791710
MWJC01000017
Bacillota
Clostridium botulinum [MWJC]
24172
24096
-
Met
CAT
[ENA]
¡û
>W1711791822
MWJD01000004
Bacillota
Clostridium botulinum [MWJD]
24828
24752
-
Met
CAT
[ENA]
¡û
>W1711791825
MWJD01000004
Bacillota
Clostridium botulinum [MWJD]
24550
24474
-
Met
CAT
[ENA]
¡û
>W1711792000
MWJG01000024
Bacillota
Clostridium botulinum [MWJG]
24824
24748
-
Met
CAT
[ENA]
¡û
>W1711792003
MWJG01000024
Bacillota
Clostridium botulinum [MWJG]
24546
24470
-
Met
CAT
[ENA]
¡û
>C171040829
CP015756
Bacillota
Clostridium estertheticum subsp. estertheticum DSM 8809 [CP015756]
4623696
4623620
-
Met
CAT
-
¡û
>C171040836
CP015756
Bacillota
Clostridium estertheticum subsp. estertheticum DSM 8809 [CP015756]
4622785
4622709
-
Met
CAT
-
¡û
>WENV180137503
OATO01055534
[OATO] human gut metagenome; faeces
122
198
+
Met
CAT
[ENA]
¢þ
>WENV180315136
OBKH01024707
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
413
337
-
Met
CAT
[ENA]
¢þ
>W141039798
ALYJ01000083
Bacillota
Clostridium botulinum CDC66177 [ALYJ]
117453
117529
+
Met
CAT
[ENA]
¡û
>W141039801
ALYJ01000083
Bacillota
Clostridium botulinum CDC66177 [ALYJ]
117731
117807
+
Met
CAT
[ENA]
¡û
>WENV180477898
OBYZ01034526
[OBYZ] human gut metagenome; faeces
161
237
+
Met
CAT
[ENA]
¢þ
>WENV180486246
OBZL01000083
[OBZL] human gut metagenome; faeces
18844
18768
-
Met
CAT
[ENA]
¢þ
>WENV180486249
OBZL01000083
[OBZL] human gut metagenome; faeces
18573
18497
-
Met
CAT
[ENA]
¢þ
>WENV180533461
OCHL01088841
[OCHL] human gut metagenome; human gut
114
190
+
Met
CAT
[ENA]
¢þ
>WENV181218596
OFCM01010566
[OFCM] metagenome; Human gut stool
295
371
+
Met
CAT
[ENA]
¢þ
>WENV181219404
OFCO01000814
[OFCO] metagenome; Human gut stool
155
231
+
Met
CAT
[ENA]
¢þ
>WENV181220364
OFCQ01002652
[OFCQ] metagenome; Human gut stool
155
231
+
Met
CAT
[ENA]
¢þ
>WENV181220611
OFCR01002369
[OFCR] metagenome; Human gut stool
1088
1012
-
Met
CAT
[ENA]
¢þ
>WENV181221495
OFCV01002014
[OFCV] metagenome; Human gut stool
155
231
+
Met
CAT
[ENA]
¢þ
>WENV181463726
OGEO01026860
[OGEO] metagenome; Human gut stool
684
608
-
Met
CAT
[ENA]
¢þ
>W141167943
AXUN02000172
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
125093
125169
+
Met
CAT
[ENA]
¡û
>WENV181801932
OGSC01000383
[OGSC] human gut metagenome; fecal sample 8 from infant 5
135
59
-
Met
CAT
[ENA]
¢þ
>WENV181801977
OGSC01000628
[OGSC] human gut metagenome; fecal sample 8 from infant 5
72
148
+
Met
CAT
[ENA]
¢þ
>WENV181804343
OGSF01000114
[OGSF] human gut metagenome; fecal sample 3 from infant 5
18461
18385
-
Met
CAT
[ENA]
¢þ
>WENV181807281
OGSO01000066
[OGSO] human gut metagenome; fecal sample 3 from infant 6
18757
18681
-
Met
CAT
[ENA]
¢þ
>WENV181807284
OGSO01000066
[OGSO] human gut metagenome; fecal sample 3 from infant 6
18485
18409
-
Met
CAT
[ENA]
¢þ
>WENV181808203
OGSR01000143
[OGSR] human gut metagenome; fecal sample 8 from infant 2
13161
13085
-
Met
CAT
[ENA]
¢þ
>WENV181809343
OGST01000015
[OGST] human gut metagenome; fecal sample 7 from infant 6
13433
13357
-
Met
CAT
[ENA]
¢þ
>WENV181809346
OGST01000015
[OGST] human gut metagenome; fecal sample 7 from infant 6
13161
13085
-
Met
CAT
[ENA]
¢þ
>WENV181809925
OGSU01000077
[OGSU] human gut metagenome; fecal sample 7 from infant 5
13260
13184
-
Met
CAT
[ENA]
¢þ
>WENV181814740
OGTH01000200
[OGTH] human gut metagenome; fecal sample 4 from infant 6
13433
13357
-
Met
CAT
[ENA]
¢þ
>WENV181814743
OGTH01000200
[OGTH] human gut metagenome; fecal sample 4 from infant 6
13161
13085
-
Met
CAT
[ENA]
¢þ
>WENV181818950
OGTU01000579
[OGTU] human gut metagenome; fecal sample 6 from infant 4
5265
5189
-
Met
CAT
[ENA]
¢þ
>WENV181819002
OGTU01003173
[OGTU] human gut metagenome; fecal sample 6 from infant 4
1186
1262
+
Met
CAT
[ENA]
¢þ
>WENV181819019
OGTU01005815
[OGTU] human gut metagenome; fecal sample 6 from infant 4
710
786
+
Met
CAT
[ENA]
¢þ
>WENV181834486
OGUR01000746
[OGUR] metagenome; Human gut stool
137
61
-
Met
CAT
[ENA]
¢þ
>WENV182407615
OIFD01000177
[OIFD] human gut metagenome; stool
18582
18506
-
Met
CAT
[ENA]
¢þ
>WENV182409591
OIFJ01000029
[OIFJ] human gut metagenome; stool
171408
171484
+
Met
CAT
[ENA]
¢þ
>WENV182409836
OIFJ01000577
[OIFJ] human gut metagenome; stool
191
267
+
Met
CAT
[ENA]
¢þ
>WENV182619641
OJKH01035323
[OJKH] metagenome; faeces
124
48
-
Met
CAT
[ENA]
¢þ
>W141265326
CCFF01000012
Bacillota
Clostridium culturomicium CL-6 [CCFF]
238345
238421
+
Met
CAT
[ENA]
¡û
>W141265329
CCFF01000012
Bacillota
Clostridium culturomicium CL-6 [CCFF]
238627
238703
+
Met
CAT
[ENA]
¡û
>WENV182673381
OJNO01008122
[OJNO] human gut metagenome; human gut
1740
1816
+
Met
CAT
[ENA]
¢þ
>W141265816
CCFK01000015
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
138207
138283
+
Met
CAT
[ENA]
¡û
>WENV182808764
OJWI01002781
[OJWI] human gut metagenome; human gut
1082
1158
+
Met
CAT
[ENA]
¢þ
>WENV182809288
OJWO01001181
[OJWO] human gut metagenome; human gut
137
61
-
Met
CAT
[ENA]
¢þ
>WENV182828721
OKDJ01000092
[OKDJ] human gut metagenome; human gut
243
167
-
Met
CAT
[ENA]
¢þ
>WENV182839819
OKHF01009775
[OKHF] human gut metagenome; human gut
415
339
-
Met
CAT
[ENA]
¢þ
>WENV182840159
OKHK01000168
[OKHK] human gut metagenome; human gut
137
61
-
Met
CAT
[ENA]
¢þ
>WENV182855809
OKNE01001565
[OKNE] human gut metagenome; human gut
137
61
-
Met
CAT
[ENA]
¢þ
>WENV182865055
OKQH01001498
[OKQH] human gut metagenome; human gut
1097
1173
+
Met
CAT
[ENA]
¢þ
>WENV182946184
OKVK01008744
[OKVK] human gut metagenome; human gut
2663
2587
-
Met
CAT
[ENA]
¢þ
>WENV182954843
OKWB01000028
[OKWB] human gut metagenome; stool
171406
171482
+
Met
CAT
[ENA]
¢þ
>WENV182958904
OKWI01000037
[OKWI] human gut metagenome; stool
159
83
-
Met
CAT
[ENA]
¢þ
>WENV182961726
OKWL01000213
[OKWL] human gut metagenome; stool
49027
49103
+
Met
CAT
[ENA]
¢þ
>WENV182962153
OKWN01000064
[OKWN] human gut metagenome; stool
159
83
-
Met
CAT
[ENA]
¢þ
>WENV182962677
OKWO01000024
[OKWO] human gut metagenome; stool
255
179
-
Met
CAT
[ENA]
¢þ
>WENV182962811
OKWO01000185
[OKWO] human gut metagenome; stool
18481
18405
-
Met
CAT
[ENA]
¢þ
>WENV182967143
OKWZ01000021
[OKWZ] human gut metagenome; stool
159
83
-
Met
CAT
[ENA]
¢þ
>WENV183087272
OLJG01001199
[OLJG] human gut metagenome; human gut
137
61
-
Met
CAT
[ENA]
¢þ
>WENV183113710
OLNP01029984
[OLNP] human gut metagenome; faeces
330
406
+
Met
CAT
[ENA]
¢þ
>C08002520
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
177647
177723
+
Met
CAT
[Ensembl]
¡û
>C08002523
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
177925
178001
+
Met
CAT
[Ensembl]
¡û
>WENV183401020
OLZT01000547
[OLZT] human gut metagenome; feces
228
152
-
Met
CAT
[ENA]
¢þ
>WENV170560798
CZCA01000592
[CZCA] anaerobic digester metagenome; anaerobic digester
13306
13230
-
Met
CAT
[ENA]
¢þ
>WENV170686295
LFRM01137931
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
752
828
+
Met
CAT
[ENA]
¢þ
>WENV170687699
LFRM01206149
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
25013
25089
+
Met
CAT
[ENA]
¢þ
>WENV170689223
LFRM01284367
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3704
3780
+
Met
CAT
[ENA]
¢þ
>WENV170721310
LSQX01185378
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
38062
38138
+
Met
CAT
[ENA]
¢þ
>WENV170722475
LSQX01230776
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9430
9506
+
Met
CAT
[ENA]
¢þ
>C181159688
CP027779
Bacillota
Clostridium botulinum RF5 [CP027779]
3889740
3889664
-
Met
CAT
-
¡û
>C181159747
CP027780
Bacillota
Clostridium botulinum Mfbjulcb3 [CP027780]
3941666
3941590
-
Met
CAT
-
¡û
>C181159809
CP027781
Bacillota
Clostridium botulinum MAP 5 [CP027781]
3878392
3878316
-
Met
CAT
-
¡û
>C191025597
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1938035
1938111
+
Met
CAT
-
¡û
>C191025600
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1938309
1938385
+
Met
CAT
-
¡û
>C191037262
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
720724
720800
+
Met
CAT
-
¡û
>C191037265
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
720995
721071
+
Met
CAT
-
¡û
>C191123792
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
722772
722848
+
Met
CAT
-
¡û
>C191123795
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
723046
723122
+
Met
CAT
-
¡û
>C191222110
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2494845
2494769
-
Met
CAT
-
¡û
>C191222113
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2494579
2494503
-
Met
CAT
-
¡û
>W141702354
JMLK01000039
Bacillota
Clostridium akagii DSM 12554 [JMLK]
16774
16698
-
Met
CAT
[ENA]
¡û
>W141732461
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
63566
63490
-
Met
CAT
[ENA]
¡û
>W141734373
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
796549
796473
-
Met
CAT
[ENA]
¡û
>W141734376
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
796257
796181
-
Met
CAT
[ENA]
¡û
>W141822269
JQOJ01000031
Bacillota
Clostridium botulinum [JQOJ]
151798
151874
+
Met
CAT
[ENA]
¡û
>W141822272
JQOJ01000031
Bacillota
Clostridium botulinum [JQOJ]
152076
152152
+
Met
CAT
[ENA]
¡û
>W141822353
JQOK01000039
Bacillota
Clostridium botulinum [JQOK]
19994
19918
-
Met
CAT
[ENA]
¡û
>W09134214
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
3690491
3690415
-
Met
CAT
[ENA]
¡û
>W09134217
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
3690213
3690137
-
Met
CAT
[ENA]
¡û
>W1910129091
BHYK01000004
Bacillota
Clostridium tagluense A121 [BHYK]
20686
20610
-
Met
CAT
[ENA]
¡û
>W1910129098
BHYK01000004
Bacillota
Clostridium tagluense A121 [BHYK]
19402
19326
-
Met
CAT
[ENA]
¡û
>W1911159939
NPMX01000008
Bacillota
Clostridium botulinum 202F [NPMX]
151954
152030
+
Met
CAT
[ENA]
¡û
>W1911159942
NPMX01000008
Bacillota
Clostridium botulinum 202F [NPMX]
152232
152308
+
Met
CAT
[ENA]
¡û
>W1911493632
OBIP01000008
Bacillota
Clostridium paraputrificum LH141 [OBIP]
171864
171940
+
Met
CAT
[ENA]
¡û
>W1911493662
OBIP01000029
Bacillota
Clostridium paraputrificum LH141 [OBIP]
27
103
+
Met
CAT
[ENA]
¡û
>W1911493883
OBJN01000007
Bacillota
Clostridium paraputrificum LH025 [OBJN]
171871
171947
+
Met
CAT
[ENA]
¡û
>W1911493886
OBJN01000007
Bacillota
Clostridium paraputrificum LH025 [OBJN]
172143
172219
+
Met
CAT
[ENA]
¡û
>W1810367581
PVXQ01000008
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
111300
111376
+
Met
CAT
[ENA]
¡û
>W1810367584
PVXQ01000008
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
111578
111654
+
Met
CAT
[ENA]
¡û
>C151070191
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
168840
168916
+
Met
CAT
[Ensembl]
¡û
>C151070194
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
169118
169194
+
Met
CAT
[Ensembl]
¡û
>W1510060570
CCXK01000012
Bacillota
Clostridium culturomicium CL-6 [CCXK]
238345
238421
+
Met
CAT
[ENA]
¡û
>W1510060573
CCXK01000012
Bacillota
Clostridium culturomicium CL-6 [CCXK]
238627
238703
+
Met
CAT
[ENA]
¡û
>W1511445741
JUWA01000055
Bacillota
Clostridium botulinum 713_CBOT [JUWA]
136
60
-
Met
CAT
[ENA]
¡û
>W1511565868
LAGF01000079
Bacillota
Clostridium sporogenes CDC23284 [LAGF]
196
120
-
Met
CAT
[ENA]
¡û
>W1511699169
LGII01000028
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
151807
151883
+
Met
CAT
[ENA]
¡û
>W1511699172
LGII01000028
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
152085
152161
+
Met
CAT
[ENA]
¡û
>W1511699186
LGIJ01000009
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
24823
24747
-
Met
CAT
[ENA]
¡û
>W1511699189
LGIJ01000009
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
24545
24469
-
Met
CAT
[ENA]
¡û
>C161104262
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
180171
180247
+
Met
CAT
-
¡û
>C161104265
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
180448
180524
+
Met
CAT
-
¡û
>W1610104373
CZBQ01000025
Bacillota
Clostridium paraputrificum [CZBQ]
192
268
+
Met
CAT
[ENA]
¡û
>W1610602115
LFPA01000121
Bacillota
Clostridium botulinum [LFPA]
27892
27968
+
Met
CAT
[ENA]
¡û
>W1610602118
LFPA01000121
Bacillota
Clostridium botulinum [LFPA]
28170
28246
+
Met
CAT
[ENA]
¡û
>W1610602513
LFPH01000015
Bacillota
Clostridium sporogenes botulinum [LFPH]
17915
17839
-
Met
CAT
[ENA]
¡û
>W1610604253
LFQW01000009
Bacillota
Clostridium botulinum [LFQW]
114090
114166
+
Met
CAT
[ENA]
¡û
>W1610604340
LFQX01000007
Bacillota
Clostridium botulinum [LFQX]
173071
173147
+
Met
CAT
[ENA]
¡û
>W1611056122
MAPZ01000024
Bacillota
Clostridium paraputrificum [MAPZ]
178106
178182
+
Met
CAT
[ENA]
¡û
>W1710107077
CZBQ01000025
Bacillota
Clostridium paraputrificum [CZBQ]
192
268
+
Met
CAT
[ENA]
¡û
>W1710518402
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
298234
298310
+
Met
CAT
[ENA]
¡û
>W1710556610
FOKI01000041
Bacillota
Clostridium frigidicarnis [FOKI]
26664
26588
-
Met
CAT
[ENA]
¡û
>W1710570813
FOVK01000003
Bacillota
Proteiniclasticum ruminis [FOVK]
156519
156595
+
Met
CAT
[ENA]
¡û
>W1710586838
FQXM01000041
Bacillota
Clostridium grantii DSM 8605 [FQXM]
18902
18826
-
Met
CAT
[ENA]
¡û
>W1710588705
FQZO01000007
Bacillota
Clostridium amylolyticum [FQZO]
42890
42814
-
Met
CAT
[ENA]
¡û
>W1710723631
LFPA01000121
Bacillota
Clostridium botulinum [LFPA]
27892
27968
+
Met
CAT
[ENA]
¡û
>W1710723634
LFPA01000121
Bacillota
Clostridium botulinum [LFPA]
28170
28246
+
Met
CAT
[ENA]
¡û
>W1710724029
LFPH01000015
Bacillota
Clostridium sporogenes botulinum [LFPH]
17915
17839
-
Met
CAT
[ENA]
¡û
>W1710724140
LFPJ01000008
Bacillota
Clostridium sporogenes botulinum [LFPJ]
118983
119059
+
Met
CAT
[ENA]
¡û
>W1710725769
LFQW01000009
Bacillota
Clostridium botulinum [LFQW]
114090
114166
+
Met
CAT
[ENA]
¡û
>W1710725856
LFQX01000007
Bacillota
Clostridium botulinum [LFQX]
173071
173147
+
Met
CAT
[ENA]
¡û
>W1710754745
LHUM01000037
Bacillota
Clostridium botulinum [LHUM]
25232
25156
-
Met
CAT
[ENA]
¡û
>W1710754748
LHUM01000037
Bacillota
Clostridium botulinum [LHUM]
24954
24878
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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