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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194311 (87 seq.)
>W131230352
AUHN01000009
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
121709
121633
-
Met
CAT
[ENA]
¡û
>WENV180114480
OAPS01011434
[OAPS] marine metagenome; sea water
786
860
+
Met
CAT
[ENA]
¡û
>WENV180361906
OBNW01008141
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
665
739
+
Met
CAT
[ENA]
¡û
>WENV180363929
OBNZ01026858
[OBNZ] marine metagenome; ENVO:00002010
291
217
-
Met
CAT
[ENA]
¡û
>WENV180365010
OBOB01002596
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
917
991
+
Met
CAT
[ENA]
¡û
>WENV180367496
OBOE01116647
[OBOE] marine metagenome; ENVO:00002010
368
294
-
Met
CAT
[ENA]
¡û
>WENV180394565
OBPS01018270
[OBPS] marine metagenome; ENVO:00002010 seawater
482
556
+
Met
CAT
[ENA]
¡û
>WENV180395329
OBPT01009390
[OBPT] marine metagenome; ENVO:00002010 seawater
1302
1376
+
Met
CAT
[ENA]
¡û
>WENV181126171
OEFV01013575
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
555
629
+
Met
CAT
[ENA]
¡û
>WENV181843192
OGVU01002561
[OGVU] freshwater metagenome; freshwater
779
705
-
Met
CAT
[ENA]
¡û
>W141241399
CAHH01000007
Actinomycetota
Timonella senegalensis JC301 [CAHH]
798
724
-
Met
CAT
[ENA]
¡û
>W141241400
CAHH01000007
Actinomycetota
Timonella senegalensis JC301 [CAHH]
279
205
-
Met
CAT
[ENA]
¡û
>W141243065
CAJC01000184
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
15516
15590
+
Met
CAT
[ENA]
¡û
>WENV182540475
OJAJ01003194
[OJAJ] seawater metagenome; Sea water
1063
1137
+
Met
CAT
[ENA]
¡û
>WENV182548530
OJBW01001497
[OJBW] seawater metagenome; Sea water
309
235
-
Met
CAT
[ENA]
¡û
>WENV182550122
OJBZ01004010
[OJBZ] seawater metagenome; Sea water
2737
2811
+
Met
CAT
[ENA]
¡û
>WENV182553181
OJCR01000294
[OJCR] seawater metagenome; Sea water
24427
24501
+
Met
CAT
[ENA]
¡û
>WENV182554182
OJCT01009415
[OJCT] seawater metagenome; Sea water
680
754
+
Met
CAT
[ENA]
¡û
>WENV182561577
OJDX01000007
[OJDX] seawater metagenome; Sea water
177
103
-
Met
CAT
[ENA]
¡û
>WENV182561914
OJDY01000007
[OJDY] seawater metagenome; Sea water
56213
56287
+
Met
CAT
[ENA]
¡û
>WENV182562579
OJDZ01013219
[OJDZ] seawater metagenome; Sea water
514
440
-
Met
CAT
[ENA]
¡û
>WENV182562650
OJEA01000008
[OJEA] seawater metagenome; Sea water
1585
1511
-
Met
CAT
[ENA]
¡û
>WENV182563085
OJEB01000112
[OJEB] seawater metagenome; Sea water
1783
1709
-
Met
CAT
[ENA]
¡û
>WENV182569005
OJEY01000013
[OJEY] seawater metagenome; Sea water
177
103
-
Met
CAT
[ENA]
¡û
>WENV182574701
OJFS01000522
[OJFS] seawater metagenome; Sea water
3463
3389
-
Met
CAT
[ENA]
¡û
>WENV182575808
OJFW01002722
[OJFW] seawater metagenome; Sea water
762
836
+
Met
CAT
[ENA]
¡û
>WENV182576723
OJFY01002763
[OJFY] seawater metagenome; Sea water
756
830
+
Met
CAT
[ENA]
¡û
>WENV182580779
OJGW01012528
[OJGW] seawater metagenome; Sea water
1636
1710
+
Met
CAT
[ENA]
¡û
>WENV182582104
OJHA01000021
[OJHA] seawater metagenome; Sea water
29991
30065
+
Met
CAT
[ENA]
¡û
>WENV182582422
OJHB01000084
[OJHB] seawater metagenome; Sea water
19356
19430
+
Met
CAT
[ENA]
¡û
>WENV182583200
OJHD01001131
[OJHD] seawater metagenome; Sea water
709
635
-
Met
CAT
[ENA]
¡û
>WENV182584947
OJHG01036442
[OJHG] seawater metagenome; Sea water
286
212
-
Met
CAT
[ENA]
¡û
>WENV182587694
OJHN01001728
[OJHN] seawater metagenome; Sea water
786
860
+
Met
CAT
[ENA]
¡û
>WENV182588421
OJHT01001366
[OJHT] seawater metagenome; Sea water
136
210
+
Met
CAT
[ENA]
¡û
>WENV183054517
OLGU01000015
[OLGU] seawater metagenome; Sea water
54187
54261
+
Met
CAT
[ENA]
¡û
>WENV183055081
OLGW01004436
[OLGW] seawater metagenome; Sea water
680
754
+
Met
CAT
[ENA]
¡û
>WENV183059263
OLHU01000155
[OLHU] seawater metagenome; Sea water
1567
1493
-
Met
CAT
[ENA]
¡û
>WENV183060218
OLHX01000137
[OLHX] seawater metagenome; Sea water
589
515
-
Met
CAT
[ENA]
¡û
>WENV183061000
OLHY01025064
[OLHY] seawater metagenome; Sea water
781
855
+
Met
CAT
[ENA]
¡û
>WENV183617347
OOEE01190595
[OOEE] marine metagenome; sea ice
81
155
+
Met
CAT
[ENA]
¡û
>WENV183689946
ORMF011519787
[ORMF] groundwater metagenome; groundwater
125
199
+
Met
CAT
[ENA]
¡û
>WENV170118785
CENJ01089247
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
162
86
-
Met
CAT
[ENA]
¡û
>WENV170135694
CENU01289628
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
102
26
-
Met
CAT
[ENA]
¡û
>WENV170568984
FLMP01105650
[FLMP] seawater metagenome; seawater
413
487
+
Met
CAT
[ENA]
¡û
>WENV170570751
FLOH01000020
[FLOH] marine metagenome; water
486327
486253
-
Met
CAT
[ENA]
¡û
>WENV170572806
FLOH01001317
[FLOH] marine metagenome; water
3791
3865
+
Met
CAT
[ENA]
¡û
>WENV170598872
FUWD010052816
[FUWD] metagenome; unknown
425
351
-
Met
CAT
[ENA]
¡û
>WENV170616224
FUWD012881851
[FUWD] metagenome; unknown
528
602
+
Met
CAT
[ENA]
¡û
>WENV170619918
FUWD013022787
[FUWD] metagenome; unknown
941
867
-
Met
CAT
[ENA]
¡û
>WENV170622547
FUWD013109012
[FUWD] metagenome; unknown
780
706
-
Met
CAT
[ENA]
¡û
>WENV170626834
FUWD013229769
[FUWD] metagenome; unknown
28021
28095
+
Met
CAT
[ENA]
¡û
>WENV170627516
FUWD013233003
[FUWD] metagenome; unknown
24055
24129
+
Met
CAT
[ENA]
¡û
>WENV170628037
FUWD013240914
[FUWD] metagenome; unknown
941
867
-
Met
CAT
[ENA]
¡û
>WENV170630763
FUWD013323184
[FUWD] metagenome; unknown
1265
1339
+
Met
CAT
[ENA]
¡û
>WENV170863680
MDTB01094514
[MDTB] marine metagenome; seawater
4302
4226
-
Met
CAT
[ENA]
¡û
>WENV170952169
MEHZ011586859
[MEHZ] marine metagenome; marine surface water
8230
8156
-
Met
CAT
[ENA]
¡û
>WENV170979407
MTKZ01088734
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
469
543
+
Met
CAT
[ENA]
¡û
>C181055922
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
479041
478967
-
Met
CAT
-
¡û
>C181212443
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
609667
609741
+
Met
CAT
-
¡û
>W141750778
JNSD01000007
Actinomycetota
actinobacterium acMicro-4 [JNSD]
10347
10423
+
Met
CAT
[ENA]
¡û
>W141769463
JOFV01000010
Actinomycetota
Oerskovia turbata [JOFV]
135612
135536
-
Met
CAT
[ENA]
¡û
>W09109181
ABUA01000019
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
24787
24711
-
Met
CAT
[ENA]
¡û
>W1911676410
QGTB01000004
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [QGTB]
291647
291571
-
Met
CAT
[ENA]
¡û
>W1810090067
PGFE01000001
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
546415
546339
-
Met
CAT
[ENA]
¡û
>SRA1005220
SRR006907.117855
metagenomic water samples (SRP000427)
229
153
-
Met
CAT
[SRA]
>W1810503446
QBKD01000001
Actinomycetota
Microbacteriaceae bacterium MWH-Ta3 [QBKD]
881634
881710
+
Met
CAT
[ENA]
¡û
>W2010269010
CABKRS020000001
Actinomycetota
Jonesiaceae bacterium iMX7 [CABKRS]
124489
124415
-
Met
CAT
[ENA]
¡û
>W2010269011
CABKRS020000001
Actinomycetota
Jonesiaceae bacterium iMX7 [CABKRS]
123970
123896
-
Met
CAT
[ENA]
¡û
>SRA1035780
SRR035089.373495
454 Sequencing (SRP001810)
316
242
-
Met
CAT
[SRA]
>W2011253429
QGTB01000004
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [QGTB]
291647
291571
-
Met
CAT
[ENA]
¡û
>W2011448895
RKIJ01000011
Actinomycetota
Cellulomonas sp. PhB143 [RKIJ]
350217
350293
+
Met
CAT
[ENA]
¡û
>W2011545384
SDJQ01000019
Actinomycetota
Oerskovia turbata JCM12123 [SDJQ]
5680
5756
+
Met
CAT
[ENA]
¡û
>W2011545405
SDJR01000002
Actinomycetota
Oerskovia turbata JCM3160 [SDJR]
270021
269945
-
Met
CAT
[ENA]
¡û
>SRA1046285
SRR035093.271116
454 Sequencing (SRP001814)
220
294
+
Met
CAT
[SRA]
>SRA1046730
SRR035093.372392
454 Sequencing (SRP001814)
301
227
-
Met
CAT
[SRA]
>SRA1053436
SRR035098.404983
454 Sequencing (SRP001819)
112
38
-
Met
CAT
[SRA]
>SRA1053585
SRR035098.444359
454 Sequencing (SRP001819)
266
340
+
Met
CAT
[SRA]
>SRA1053637
SRR035098.458189
454 Sequencing (SRP001819)
275
349
+
Met
CAT
[SRA]
>SRA1053653
SRR035098.460252
454 Sequencing (SRP001819)
287
213
-
Met
CAT
[SRA]
>W2110062708
BOOX01000004
Actinomycetota
Sediminihabitans luteus NBRC 108568 [BOOX]
186662
186586
-
Met
CAT
[ENA]
¡û
>W2110259386
JACSPN010000003
Actinomycetota
Oerskovia sp. Sa1BUA8 [JACSPN]
42990
43066
+
Met
CAT
[ENA]
¡û
>W2110260731
JACSQQ010000012
Actinomycetota
Oerskovia sp. Sa4CUA1 [JACSQQ]
1831
1907
+
Met
CAT
[ENA]
¡û
>C211356748
CP077403
Actinomycetota
Jonesia denitrificans FDAARGOS 1440 [CP077403]
1958293
1958219
-
Met
CAT
-
¡û
>C231248838
CP088018
Actinomycetota
Ruania suaedae LR1S40 [CP088018]
2890786
2890712
-
Met
CAT
-
¡û
>C241011840
AP027729
Actinomycetota
Paraoerskovia sediminicola NBRC 108565 [AP027729]
519272
519196
-
Met
CAT
-
¡û
>C241063217
CP042174
Actinomycetota
Oerskovia sp. KBS0722 [CP042174]
1865497
1865573
+
Met
CAT
-
¡û
>C10107900
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
609825
609901
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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