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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194690 (54 seq.)
>W1710909529
LNQO01000002
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
77284
77210
-
Arg
TCT
[ENA]
¡û
>W1711281605
LZMI01000014
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
133133
133209
+
Arg
TCT
[ENA]
¡û
>W1711281901
LZMO01000091
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
13142
13216
+
Arg
TCT
[ENA]
¡û
>W1711286457
LZTC01000023
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
19581
19505
-
Arg
TCT
[ENA]
¡û
>W1711286512
LZTD01000070
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
63881
63805
-
Arg
TCT
[ENA]
¡û
>W1711286559
LZTE01000034
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
63882
63806
-
Arg
TCT
[ENA]
¡û
>W1711492253
MKKG01000005
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
20081
20005
-
Arg
TCT
[ENA]
¡û
>W131156544
AQPW01000004
Actinomycetota
Gordonia terrae C-6 [AQPW]
233334
233410
+
Arg
TCT
[ENA]
¡û
>W131239452
BANR01000022
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
2231
2305
+
Arg
TCT
[ENA]
¡û
>W131239496
BANS01000027
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
20883
20807
-
Arg
TCT
[ENA]
¡û
>W131239710
BANX01000020
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
150859
150933
+
Arg
TCT
[ENA]
¡û
>W1711776927
MVKV01000015
Actinomycetota
Gordonia sp. IITR100 [MVKV]
77427
77353
-
Arg
TCT
[ENA]
¡û
>W1712061694
NGFO01000015
Actinomycetota
Gordonia lacunae [NGFO]
64581
64655
+
Arg
TCT
[ENA]
¡û
>W141200032
AYXO01000006
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
17152
17076
-
Arg
TCT
[ENA]
¡û
>W141256034
CBVP010000075
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
2171
2095
-
Arg
TCT
[ENA]
¡û
>W141285742
JAOD01000007
Actinomycetota
Mycobacterium intracellulare 2285 (S) [JAOD]
1275271
1275197
-
Arg
TCT
[ENA]
¡û
>W141285857
JAOG01000001
Actinomycetota
Mycobacterium intracellulare 1956 [JAOG]
1304125
1304051
-
Arg
TCT
[ENA]
¡û
>WENV170566455
FKKE01031445
[FKKE] freshwater metagenome; freshwater
3795
3869
+
Arg
TCT
[ENA]
¢þ
>C181181638
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
2310852
2310778
-
Arg
TCT
-
¡û
>C191020789
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
3344706
3344781
+
Arg
TCT
-
¡û
>C191050822
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
2831208
2831133
-
Arg
TCT
-
¡û
>C191130614
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
2389904
2389978
+
Arg
TCT
-
¡û
>W141756180
JNXA01000001
Actinomycetota
Gordonia terrae [JNXA]
524748
524822
+
Arg
TCT
[ENA]
¡û
>W09109071
ABTV01000002
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
331314
331238
-
Arg
TCT
[ENA]
¡û
>W1910424375
FVPM01000173
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
7319
7395
+
Arg
TCT
[ENA]
¡û
>W1810189521
PKJC01000001
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
46176
46101
-
Arg
TCT
[ENA]
¡û
>C151053079
CP009499
Actinomycetota
Mycobacterium intracellulare [CP009499]
1719643
1719569
-
Arg
TCT
[Ensembl]
¡û
>C10107086
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
2144580
2144504
-
Arg
TCT
[Ensembl]
¡û
>W11184690
BACI01000095
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
46431
46507
+
Arg
TCT
[ENA]
¡û
>W121124295
BAFB01000217
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
1265
1339
+
Arg
TCT
[ENA]
¡û
>W121124337
BAFC01000112
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
31249
31325
+
Arg
TCT
[ENA]
¡û
>W121124367
BAFD01000026
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
78326
78252
-
Arg
TCT
[ENA]
¡û
>W121126546
BAHB01000068
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
97504
97428
-
Arg
TCT
[ENA]
¡û
>W121126571
BAHC01000009
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
20435
20511
+
Arg
TCT
[ENA]
¡û
>W121126688
BAHE01000016
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
33377
33303
-
Arg
TCT
[ENA]
¡û
>W1610051128
BBGN01002380
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
312
388
+
Arg
TCT
[ENA]
¡û
>W1610068673
BCRN01000003
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
256839
256915
+
Arg
TCT
[ENA]
¡û
>W1610081223
BDDI01000004
Actinomycetota
Hoyosella altamirensis [BDDI]
310096
310172
+
Arg
TCT
[ENA]
¡û
>C131001594
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
2213711
2213635
-
Arg
TCT
[Ensembl]
¡û
>W1610515297
FMAX01000002
Actinomycetota
Gordonia sp. v-85 [FMAX]
77284
77210
-
Arg
TCT
[ENA]
¡û
>W1610638749
LIYC01000003
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
78255
78179
-
Arg
TCT
[ENA]
¡û
>W1610767888
LNQO01000002
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
77284
77210
-
Arg
TCT
[ENA]
¡û
>W1611040890
LZMI01000014
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
133133
133209
+
Arg
TCT
[ENA]
¡û
>W1611041186
LZMO01000091
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
13142
13216
+
Arg
TCT
[ENA]
¡û
>W1611044018
LZTC01000023
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
19581
19505
-
Arg
TCT
[ENA]
¡û
>W1611044073
LZTD01000070
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
63881
63805
-
Arg
TCT
[ENA]
¡û
>W1611044120
LZTE01000034
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
63882
63806
-
Arg
TCT
[ENA]
¡û
>W1710047527
BBGN01002380
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
312
388
+
Arg
TCT
[ENA]
¡û
>W1710066046
BCRN01000003
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
256839
256915
+
Arg
TCT
[ENA]
¡û
>W1710079874
BDDI01000004
Actinomycetota
Hoyosella altamirensis [BDDI]
310096
310172
+
Arg
TCT
[ENA]
¡û
>W1710500987
FMAX01000002
Actinomycetota
Gordonia sp. v-85 [FMAX]
77284
77210
-
Arg
TCT
[ENA]
¡û
>W1710527887
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
962469
962545
+
Arg
TCT
[ENA]
¡û
>W1710552748
FOHB01000003
Actinomycetota
Pedococcus cremeus [FOHB]
177464
177538
+
Arg
TCT
[ENA]
¡û
>W1710774580
LIYC01000003
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
78255
78179
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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