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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194956 (52 seq.)
>W131224577
AUCX01000013
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
49869
49793
-
Pro
GGG
[ENA]
¡û
>W131224578
AUCX01000013
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
14893
14817
-
Pro
GGG
[ENA]
¡û
>W131224776
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
899964
899888
-
Pro
GGG
[ENA]
¡û
>W131161017
AQXE01000009
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
153742
153818
+
Pro
GGG
[ENA]
¡û
>W131224803
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
106313
106237
-
Pro
GGG
[ENA]
¡û
>WENV180043209
LQAH01010676
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
432
508
+
Pro
GGG
[ENA]
¢þ
>WENV180043222
LQAH01012407
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
786
710
-
Pro
GGG
[ENA]
¢þ
>WENV180371395
OBOI01002121
[OBOI] sediment metagenome; sediment
3396
3472
+
Pro
GGG
[ENA]
¢þ
>W141076112
ATBP01000110
Thermodesulfobacteriota
Candidatus Magnetoglobus multicellularis multicellularis str. Araruama [ATBP]
31
106
+
Pro
GGG
[ENA]
¡û
>WENV181237714
OFFB01001115
[OFFB] mouse gut metagenome; faeces
2503
2579
+
Pro
GGG
[ENA]
¢þ
>WENV181238706
OFFC01002060
[OFFC] mouse gut metagenome; faeces
6126
6202
+
Pro
GGG
[ENA]
¢þ
>WENV181240744
OFFE01006751
[OFFE] mouse gut metagenome; faeces
2458
2534
+
Pro
GGG
[ENA]
¢þ
>WENV181242638
OFFG01001075
[OFFG] mouse gut metagenome; faeces
2671
2747
+
Pro
GGG
[ENA]
¢þ
>WENV181245044
OFFI01009288
[OFFI] mouse gut metagenome; faeces
2746
2822
+
Pro
GGG
[ENA]
¢þ
>WENV181246048
OFFJ01007166
[OFFJ] mouse gut metagenome; faeces
2568
2492
-
Pro
GGG
[ENA]
¢þ
>WENV181252814
OFFQ01000104
[OFFQ] mouse gut metagenome; faeces
15434
15358
-
Pro
GGG
[ENA]
¢þ
>WENV181255452
OFFS01003994
[OFFS] mouse gut metagenome; faeces
2476
2552
+
Pro
GGG
[ENA]
¢þ
>WENV181260583
OFFX01000260
[OFFX] mouse gut metagenome; faeces
43585
43509
-
Pro
GGG
[ENA]
¢þ
>WENV181262386
OFFY01003945
[OFFY] mouse gut metagenome; faeces
2472
2548
+
Pro
GGG
[ENA]
¢þ
>WENV181267377
OFGC01004503
[OFGC] mouse gut metagenome; faeces
2568
2492
-
Pro
GGG
[ENA]
¢þ
>WENV181268349
OFGD01004574
[OFGD] mouse gut metagenome; faeces
2568
2492
-
Pro
GGG
[ENA]
¢þ
>WENV181273396
OFGH01001497
[OFGH] mouse gut metagenome; faeces
12586
12662
+
Pro
GGG
[ENA]
¢þ
>WENV181274644
OFGI01001222
[OFGI] mouse gut metagenome; faeces
8894
8970
+
Pro
GGG
[ENA]
¢þ
>WENV181275583
OFGJ01005904
[OFGJ] mouse gut metagenome; faeces
541
617
+
Pro
GGG
[ENA]
¢þ
>WENV181280769
OFGO01001669
[OFGO] mouse gut metagenome; faeces
2568
2492
-
Pro
GGG
[ENA]
¢þ
>WENV181301843
OFHO01001352
[OFHO] mouse gut metagenome; faeces
15430
15354
-
Pro
GGG
[ENA]
¢þ
>WENV183707036
PDWI01006423
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16758
16682
-
Pro
GGG
[ENA]
¢þ
>WENV183718015
PDWJ01002177
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15675
15751
+
Pro
GGG
[ENA]
¢þ
>WENV170007810
AMWB02159000
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
7091
7015
-
Pro
GGG
[ENA]
¢þ
>WENV170418631
CEUM01056742
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
189
113
-
Pro
GGG
[ENA]
¢þ
>WENV170438398
CEUU01114576
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5870
5794
-
Pro
GGG
[ENA]
¢þ
>WENV170439798
CEUV01052254
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
340
264
-
Pro
GGG
[ENA]
¢þ
>WENV170646463
JQGR01008834
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
300
224
-
Pro
GGG
[ENA]
¢þ
>WENV170896360
MDTD01094401
[MDTD] marine metagenome; seawater
11055
11131
+
Pro
GGG
[ENA]
¢þ
>W09118001
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
203035
202959
-
Pro
GGG
[ENA]
¡û
>W09118003
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
202491
202415
-
Pro
GGG
[ENA]
¡û
>W09118024
ACCN01000009
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
77975
77899
-
Pro
GGG
[ENA]
¡û
>W141701602
JMKT01000017
Thermodesulfobacteriota
Desulfonatronovibrio hydrogenovorans DSM 9292 [JMKT]
126495
126419
-
Pro
GGG
[ENA]
¡û
>C141011918
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2808737
2808813
+
Pro
GGG
-
¡û
>C141011955
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1799947
1799871
-
Pro
GGG
-
¡û
>W10111370
ADDI01000006
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
33230
33306
+
Pro
GGG
[ENA]
¡û
>C11106849
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1879658
1879734
+
Pro
GGG
[Ensembl]
¡û
>W11114313
ADDI01000006
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
33230
33306
+
Pro
GGG
[ENA]
¡û
>C121009012
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
443328
443252
-
Pro
GGG
[Ensembl]
¡û
>W1610046038
BBCB01000002
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
180471
180395
-
Pro
GGG
[ENA]
¡û
>W1610082368
BDFE01000020
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
7303
7227
-
Pro
GGG
[ENA]
¡û
>C131018100
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2808737
2808813
+
Pro
GGG
[Ensembl]
¡û
>C131018137
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1799947
1799871
-
Pro
GGG
[Ensembl]
¡û
>W1710042834
BBCB01000002
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
180471
180395
-
Pro
GGG
[ENA]
¡û
>W1710081368
BDFE01000020
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
7303
7227
-
Pro
GGG
[ENA]
¡û
>W1710520992
FNGA01000004
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
11352
11276
-
Pro
GGG
[ENA]
¡û
>W1710520997
FNGA01000006
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
42532
42608
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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