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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195727 (132 seq.)
>W1710991674
LPXW01000031
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
122269
122193
-
Pro
TGG
[ENA]
¡û
>W1711009410
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
89332
89256
-
Pro
TGG
[ENA]
¡û
>W131046705
AMSP01000001
Actinomycetota
Brevibacterium casei S18 [AMSP]
510698
510622
-
Pro
TGG
[ENA]
¡û
>C171057877
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1936935
1936859
-
Pro
TGG
-
¡û
>w005569
AAGP01000026
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
43964
43891
-
Pro
TGG
[ENA]
¡û
>WENV180362337
OBNW01121173
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
16
90
+
Pro
TGG
[ENA]
¡û
>WENV181322669
OFKT01015525
[OFKT] marine metagenome; sea ice
160
86
-
Pro
TGG
[ENA]
¡û
>WENV181323501
OFKY01002212
[OFKY] marine metagenome; sea ice
1161
1087
-
Pro
TGG
[ENA]
¡û
>WENV181323751
OFKZ01002462
[OFKZ] marine metagenome; sea ice
1270
1196
-
Pro
TGG
[ENA]
¡û
>W141282877
JAJB01000007
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
60397
60471
+
Pro
TGG
[ENA]
¡û
>WENV183511407
OMJG01000206
[OMJG] food metagenome; Cotija cheese
279
205
-
Pro
TGG
[ENA]
¡û
>WENV183620888
OOFT01000007
[OOFT] marine metagenome; sea ice
48714
48788
+
Pro
TGG
[ENA]
¡û
>WENV170614495
FUWD012834978
[FUWD] metagenome; unknown
22524
22448
-
Pro
TGG
[ENA]
¡û
>C191031880
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
2049232
2049158
-
Pro
TGG
-
¡û
>C191031928
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1924807
1924733
-
Pro
TGG
-
¡û
>C191031976
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1835710
1835636
-
Pro
TGG
-
¡û
>C191032023
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1893027
1892953
-
Pro
TGG
-
¡û
>C191032071
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
2034177
2034103
-
Pro
TGG
-
¡û
>C191046871
CP026734
Actinomycetota
Brevibacterium linens ATCC 19391 [CP026734]
1726402
1726328
-
Pro
TGG
-
¡û
>W1910181643
BJME01000013
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
59792
59718
-
Pro
TGG
[ENA]
¡û
>W1910331276
FSLI01000203
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
6341
6267
-
Pro
TGG
[ENA]
¡û
>W1910499995
FXYX01000007
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
66816
66742
-
Pro
TGG
[ENA]
¡û
>W1910500042
FXYY01000003
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
213817
213743
-
Pro
TGG
[ENA]
¡û
>W1910500101
FXYZ01000010
Actinomycetota
6(3) [FXYZ]
66185
66111
-
Pro
TGG
[ENA]
¡û
>W1910500123
FXZA01000001
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
608399
608473
+
Pro
TGG
[ENA]
¡û
>W1910500188
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
66288
66214
-
Pro
TGG
[ENA]
¡û
>W1910500227
FXZC01000002
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
627971
628045
+
Pro
TGG
[ENA]
¡û
>W1910500302
FXZD01000020
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
22733
22659
-
Pro
TGG
[ENA]
¡û
>W1910500350
FXZE01000044
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
924
850
-
Pro
TGG
[ENA]
¡û
>W1910500408
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
63941
64015
+
Pro
TGG
[ENA]
¡û
>W1910500488
FXZH01000025
Actinomycetota
Brevibacterium sp. 239c [FXZH]
53299
53373
+
Pro
TGG
[ENA]
¡û
>W1910500516
FXZI01000004
Actinomycetota
8(6) [FXZI]
14513
14587
+
Pro
TGG
[ENA]
¡û
>W1910871221
NCWY01000005
Actinomycetota
Brevibacterium casei OG2 [NCWY]
158994
158920
-
Pro
TGG
[ENA]
¡û
>W1911203159
NRGO01000038
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
16104
16178
+
Pro
TGG
[ENA]
¡û
>W1911203195
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
66050
65976
-
Pro
TGG
[ENA]
¡û
>W1911203213
NRGQ01000001
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
65714
65640
-
Pro
TGG
[ENA]
¡û
>W1911203615
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3723458
3723384
-
Pro
TGG
[ENA]
¡û
>W1911203812
NRHA01000012
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
65745
65671
-
Pro
TGG
[ENA]
¡û
>W1911203831
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
167189
167263
+
Pro
TGG
[ENA]
¡û
>W1911696908
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
497959
498033
+
Pro
TGG
[ENA]
¡û
>W1810057048
PDHL01000038
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
131689
131615
-
Pro
TGG
[ENA]
¡û
>W1810721386
QNRZ01000003
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
404466
404392
-
Pro
TGG
[ENA]
¡û
>W1810721480
QNSB01000003
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
404357
404283
-
Pro
TGG
[ENA]
¡û
>W1810756552
QPGC01000034
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
63448
63522
+
Pro
TGG
[ENA]
¡û
>W1810756582
QPGD01000006
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
71655
71729
+
Pro
TGG
[ENA]
¡û
>W1810756638
QPGE01000006
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
395561
395487
-
Pro
TGG
[ENA]
¡û
>SRA1023859
SRR035084.192163
454 Sequencing (SRP001805)
322
246
-
Pro
TGG
[SRA]
>SRA1024421
SRR035084.320024
454 Sequencing (SRP001805)
152
76
-
Pro
TGG
[SRA]
>SRA1025393
SRR035084.578795
454 Sequencing (SRP001805)
9
85
+
Pro
TGG
[SRA]
>SRA1025407
SRR035084.583307
454 Sequencing (SRP001805)
155
231
+
Pro
TGG
[SRA]
>W2010095292
BJME01000013
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
59792
59718
-
Pro
TGG
[ENA]
¡û
>W2010149096
CAACXN010000014
Actinomycetota
Brevibacterium casei 3012STDY7078520 [CAACXN]
413219
413145
-
Pro
TGG
[ENA]
¡û
>W2010303909
CABVPA010000001
Actinomycetota
Brevibacterium sp. Marseille-P9724 [CABVPA]
181698
181624
-
Pro
TGG
[ENA]
¡û
>W2010419727
FXYX01000007
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
66816
66742
-
Pro
TGG
[ENA]
¡û
>W2010419774
FXYY01000003
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
213817
213743
-
Pro
TGG
[ENA]
¡û
>W2010419833
FXYZ01000010
Actinomycetota
6(3) [FXYZ]
66185
66111
-
Pro
TGG
[ENA]
¡û
>W2010419855
FXZA01000001
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
608399
608473
+
Pro
TGG
[ENA]
¡û
>W2010419920
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
66288
66214
-
Pro
TGG
[ENA]
¡û
>W2010419959
FXZC01000002
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
627971
628045
+
Pro
TGG
[ENA]
¡û
>W2010420034
FXZD01000020
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
22733
22659
-
Pro
TGG
[ENA]
¡û
>W2010420082
FXZE01000044
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
924
850
-
Pro
TGG
[ENA]
¡û
>W2010420140
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
63941
64015
+
Pro
TGG
[ENA]
¡û
>W2010420220
FXZH01000025
Actinomycetota
Brevibacterium sp. 239c [FXZH]
53299
53373
+
Pro
TGG
[ENA]
¡û
>W2010420248
FXZI01000004
Actinomycetota
8(6) [FXZI]
14513
14587
+
Pro
TGG
[ENA]
¡û
>W2010567900
JAATJN010000001
Actinomycetota
Brevibacterium marinum DSM 18964 [JAATJN]
3044326
3044400
+
Pro
TGG
[ENA]
¡û
>W2010606082
JABKDD010000001
Actinomycetota
Brevibacterium sediminis FXJ8.269 [JABKDD]
480743
480669
-
Pro
TGG
[ENA]
¡û
>W2010606160
JABKDE010000006
Actinomycetota
Brevibacterium oceani BBH7 [JABKDE]
112152
112226
+
Pro
TGG
[ENA]
¡û
>W2010613873
JABSSX010000003
Actinomycetota
Brevibacterium permense VKM Ac-2280 [JABSSX]
301785
301711
-
Pro
TGG
[ENA]
¡û
>W2010939951
NCWY01000005
Actinomycetota
Brevibacterium casei OG2 [NCWY]
158994
158920
-
Pro
TGG
[ENA]
¡û
>W2011048672
NRGO01000038
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
16104
16178
+
Pro
TGG
[ENA]
¡û
>W2011048708
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
66050
65976
-
Pro
TGG
[ENA]
¡û
>W2011048726
NRGQ01000001
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
65714
65640
-
Pro
TGG
[ENA]
¡û
>W2011049128
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3723458
3723384
-
Pro
TGG
[ENA]
¡û
>W2011049325
NRHA01000012
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
65745
65671
-
Pro
TGG
[ENA]
¡û
>W2011049344
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
167189
167263
+
Pro
TGG
[ENA]
¡û
>W2011276956
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
497959
498033
+
Pro
TGG
[ENA]
¡û
>W2011417224
RHFF01000007
Actinomycetota
Brevibacterium aurantiacum L261 [RHFF]
1885
1959
+
Pro
TGG
[ENA]
¡û
>W2011417250
RHFG01000001
Actinomycetota
Brevibacterium sp. S22 [RHFG]
418
492
+
Pro
TGG
[ENA]
¡û
>W2011417312
RHFH01000004
Actinomycetota
Brevibacterium sp. S111 [RHFH]
100480
100554
+
Pro
TGG
[ENA]
¡û
>W2011538279
SCMW01000041
Actinomycetota
Brevibacterium sp. 2SA [SCMW]
20073
20147
+
Pro
TGG
[ENA]
¡û
>W2011615360
SJXG01000058
Actinomycetota
Brevibacterium sp. LS14 [SJXG]
9480
9554
+
Pro
TGG
[ENA]
¡û
>SRA1047180
SRR035093.477010
454 Sequencing (SRP001814)
239
163
-
Pro
TGG
[SRA]
>W2011816289
UFTQ01000001
Actinomycetota
Brevibacterium iodinum NCTC9742 [UFTQ]
1146331
1146257
-
Pro
TGG
[ENA]
¡û
>W2011985462
VDMQ01000001
Actinomycetota
Brevibacterium sp. MG-1 [VDMQ]
257358
257284
-
Pro
TGG
[ENA]
¡û
>W2012006560
VEKE01000003
Actinomycetota
Brevibacterium casei DE0341 [VEKE]
8204
8278
+
Pro
TGG
[ENA]
¡û
>W2012008658
VELY01000002
Actinomycetota
Brevibacterium casei DE0115 [VELY]
364267
364193
-
Pro
TGG
[ENA]
¡û
>W2012029842
VFYR01000002
Actinomycetota
Brevibacterium sp. XM4083 [VFYR]
600538
600612
+
Pro
TGG
[ENA]
¡û
>W2012038590
VIGO01000002
Actinomycetota
Brevibacterium sp. CFH 10365 [VIGO]
445380
445454
+
Pro
TGG
[ENA]
¡û
>W2012086388
VLTK01000008
Actinomycetota
Brevibacterium aurantiacum XU54 [VLTK]
148547
148621
+
Pro
TGG
[ENA]
¡û
>W2012229597
WBML01000003
Actinomycetota
Brevibacterium linens ATCC 9172 [WBML]
213745
213671
-
Pro
TGG
[ENA]
¡û
>W2110027569
BMJG01000001
Actinomycetota
Brevibacterium sediminis CGMCC 1.15472 [BMJG]
480703
480629
-
Pro
TGG
[ENA]
¡û
>W2110166352
JABAHH010000007
Actinomycetota
Brevibacterium casei NAB46 [JABAHH]
71237
71163
-
Pro
TGG
[ENA]
¡û
>W2110168672
JABASX010000001
Actinomycetota
Brevibacterium antiquum DSM 21545 [JABASX]
581731
581657
-
Pro
TGG
[ENA]
¡û
>W2110178479
JABGBS010000007
Actinomycetota
Brevibacterium casei NAB46 [JABGBS]
71237
71163
-
Pro
TGG
[ENA]
¡û
>W2110187091
JABUXX010000002
Actinomycetota
Brevibacterium aurantiacum FME34 [JABUXX]
392389
392315
-
Pro
TGG
[ENA]
¡û
>W2110187160
JABUXY010000013
Actinomycetota
Brevibacterium aurantiacum FME43 [JABUXY]
66300
66226
-
Pro
TGG
[ENA]
¡û
>W2110187209
JABUXZ010000017
Actinomycetota
Brevibacterium aurantiacum FME45 [JABUXZ]
11826
11900
+
Pro
TGG
[ENA]
¡û
>W2110187258
JABUYA010000014
Actinomycetota
Brevibacterium aurantiacum FME48 [JABUYA]
66158
66084
-
Pro
TGG
[ENA]
¡û
>W2110187289
JABUYB010000005
Actinomycetota
Brevibacterium aurantiacum FME49 [JABUYB]
72580
72654
+
Pro
TGG
[ENA]
¡û
>W2110187362
JABUYC010000026
Actinomycetota
Brevibacterium aurantiacum FME9 [JABUYC]
16138
16212
+
Pro
TGG
[ENA]
¡û
>W2110187394
JABUYD010000009
Actinomycetota
Brevibacterium sp. FME17 [JABUYD]
155678
155604
-
Pro
TGG
[ENA]
¡û
>W2110187419
JABUYE010000002
Actinomycetota
Brevibacterium sp. FME37 [JABUYE]
32932
33006
+
Pro
TGG
[ENA]
¡û
>W2110301967
JADBHF010000017
Actinomycetota
Brevibacterium renqingii REN4 [JADBHF]
436
510
+
Pro
TGG
[ENA]
¡û
>W2110302001
JADBHG010000004
Actinomycetota
Brevibacterium renqingii REN4-1 [JADBHG]
250211
250137
-
Pro
TGG
[ENA]
¡û
>W2110306281
JADDUF010000002
Actinomycetota
Brevibacterium casei NIOSBA88 [JADDUF]
1200620
1200546
-
Pro
TGG
[ENA]
¡û
>W2110484770
JAFEMW010000002
Actinomycetota
Brevibacterium sp. RIT 803 [JAFEMW]
126107
126181
+
Pro
TGG
[ENA]
¡û
>C201046703
CP030797
Actinomycetota
Brevibacterium linens RS16 [CP030797]
1865074
1865000
-
Pro
TGG
-
¡û
>C201234625
CP050152
Actinomycetota
Brevibacterium sp. WO024 [CP050152]
1918601
1918527
-
Pro
TGG
-
¡û
>C201234671
CP050153
Actinomycetota
Brevibacterium sp. YB235 [CP050153]
1700526
1700452
-
Pro
TGG
-
¡û
>C201234691
CP050154
Actinomycetota
Brevibacterium sp. o2 [CP050154]
2258001
2258075
+
Pro
TGG
-
¡û
>C201249964
CP051626
Actinomycetota
Brevibacterium sp. 'Marine' [CP051626]
1876152
1876078
-
Pro
TGG
-
¡û
>C211168071
CP062936
Actinomycetota
Brevibacterium sp. SMBL_HHYL_HB1 [CP062936]
1659006
1659080
+
Pro
TGG
-
¡û
>C211210643
CP065629
Actinomycetota
Brevibacterium casei FDAARGOS_937 [CP065629]
1169259
1169185
-
Pro
TGG
-
¡û
>C211210690
CP065630
Actinomycetota
Brevibacterium casei FDAARGOS_936 [CP065630]
685019
684945
-
Pro
TGG
-
¡û
>C211212437
CP065682
Actinomycetota
Brevibacterium casei FDAARGOS_902 [CP065682]
2576369
2576295
-
Pro
TGG
-
¡û
>C211219138
CP065989
Actinomycetota
Brevibacterium casei FDAARGOS_990 [CP065989]
2559751
2559677
-
Pro
TGG
-
¡û
>C211244306
CP068173
Actinomycetota
Brevibacterium casei FDAARGOS_1100 [CP068173]
2505680
2505606
-
Pro
TGG
-
¡û
>C211314532
CP072846
Actinomycetota
Brevibacterium oceani WW007 [CP072846]
1957459
1957384
-
Pro
TGG
-
¡û
>C211318481
CP073089
Actinomycetota
Brevibacterium sp. W7.2 [CP073089]
2165964
2166038
+
Pro
TGG
-
¡û
>C211384987
CP081305
Actinomycetota
Brevibacterium casei G20 [CP081305]
1778659
1778585
-
Pro
TGG
-
¡û
>C231252990
CP088298
Actinomycetota
Brevibacterium zhoupengii HY170 [CP088298]
2151720
2151646
-
Pro
TGG
-
¡û
>C231334602
CP093443
Actinomycetota
Brevibacterium sp. WHS-Z9 [CP093443]
1887232
1887158
-
Pro
TGG
-
¡û
>C231531135
CP110341
Actinomycetota
Brevibacterium sp. JSBI002 [CP110341]
1650044
1649970
-
Pro
TGG
-
¡û
>W1511402446
JTJZ01000020
Actinomycetota
Brevibacterium linens AE038-8 [JTJZ]
281712
281638
-
Pro
TGG
[ENA]
¡û
>WENV046777
AACY022622452
Marine microbial communities from Global Ocean Sampling (GOS)
250
328
+
Pro
TGG
[ENA]
>C161078922
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
1878716
1878642
-
Pro
TGG
[Ensembl]
¡û
>WENV056730
AACY023263660
Marine microbial communities from Global Ocean Sampling (GOS)
180
258
+
Pro
TGG
[ENA]
>W1610050881
BBGH01000070
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
6254
6330
+
Pro
TGG
[ENA]
¡û
>W1610069303
BCSJ01000011
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
282276
282202
-
Pro
TGG
[ENA]
¡û
>W1610857930
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
89332
89256
-
Pro
TGG
[ENA]
¡û
>W1710047280
BBGH01000070
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
6254
6330
+
Pro
TGG
[ENA]
¡û
>W1710066676
BCSJ01000011
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
282276
282202
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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