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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195913 (27 seq.)
>C171109195
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396063
1396139
+
Met
CAT
-
¡û
>C171109217
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417877
1417953
+
Met
CAT
-
¡û
>C171109282
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4094729
4094653
-
Met
CAT
-
¡û
>C171109299
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081729
4081653
-
Met
CAT
-
¡û
>WENV180807956
ODJI01022237
[ODJI] human metagenome; G_DNA_Tongue dorsum
608
684
+
Met
CAT
[ENA]
¢þ
>WENV180833061
ODKC01012297
[ODKC] human metagenome; G_DNA_Supragingival plaque
1279
1203
-
Met
CAT
[ENA]
¢þ
>WENV180847727
ODKT01147997
[ODKT] human metagenome; G_DNA_Supragingival plaque
5
81
+
Met
CAT
[ENA]
¢þ
>WENV180853126
ODKW01031561
[ODKW] human metagenome; G_DNA_Tongue dorsum
215
291
+
Met
CAT
[ENA]
¢þ
>WENV180858771
ODLC01030310
[ODLC] human metagenome; G_DNA_Tongue dorsum
348
272
-
Met
CAT
[ENA]
¢þ
>WENV180928498
ODTM01065274
[ODTM] human metagenome; G_DNA_Supragingival plaque
305
229
-
Met
CAT
[ENA]
¢þ
>WENV180982022
ODVE01119146
[ODVE] human metagenome; G_DNA_Supragingival plaque
13
89
+
Met
CAT
[ENA]
¢þ
>WENV180991233
ODVN01029372
[ODVN] human metagenome; G_DNA_Tongue dorsum
263
339
+
Met
CAT
[ENA]
¢þ
>WENV181009137
ODWE01032506
[ODWE] human metagenome; G_DNA_Supragingival plaque
1278
1202
-
Met
CAT
[ENA]
¢þ
>WENV181077606
OEAP01086372
[OEAP] human metagenome; G_DNA_Supragingival plaque
471
395
-
Met
CAT
[ENA]
¢þ
>WENV181146721
OEHQ01019552
[OEHQ] human metagenome; G_DNA_Supragingival plaque
337
413
+
Met
CAT
[ENA]
¢þ
>WENV181180070
OEJT01066305
[OEJT] human metagenome; G_DNA_Supragingival plaque
61
137
+
Met
CAT
[ENA]
¢þ
>W1910548219
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186729
186653
-
Met
CAT
[ENA]
¡û
>W10127829
AEES01000075
Bacillota
[Eubacterium] yurii subsp. margaretiae ATCC 43715 [AEES]
1569
1645
+
Met
CAT
[ENA]
¡û
>C11106366
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
569645
569721
+
Met
CAT
[Ensembl]
¡û
>C11106397
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2509256
2509180
-
Met
CAT
[Ensembl]
¡û
>W11135317
AEES01000075
Bacillota
[Eubacterium] yurii subsp. margaretiae ATCC 43715 [AEES]
1569
1645
+
Met
CAT
[ENA]
¡û
>W121007159
AFZE01000044
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
1922
1998
+
Met
CAT
[ENA]
¡û
>W121007205
AFZF01000031
Bacillota
Peptoanaerobacter stomatis CM2 [AFZF]
2074
2150
+
Met
CAT
[ENA]
¡û
>W121007251
AFZG01000082
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
1954
2030
+
Met
CAT
[ENA]
¡û
>W1710602790
FUYN01000010
Bacillota
Acetoanaerobium noterae [FUYN]
40375
40299
-
Met
CAT
[ENA]
¡û
>W1710602810
FUYN01000019
Bacillota
Acetoanaerobium noterae [FUYN]
886
962
+
Met
CAT
[ENA]
¡û
>W1710604157
FUZS01000036
Bacillota
[Eubacterium] yurii [FUZS]
1561
1637
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK