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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196632 (7 seq.)
>WENV180374378
OBOJ01199808
[OBOJ] marine metagenome; seawater
205
132
-
Phe
GAA
[ENA]
¡û
>WENV170146028
CENZ01027743
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
98
171
+
Phe
GAA
[ENA]
¡û
>WENV170199363
CEPL01106934
[CEPL] marine metagenome genome assembly TARA_045_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
56
129
+
Phe
GAA
[ENA]
¡û
>WENV170223510
CEQD01184380
[CEQD] marine metagenome genome assembly TARA_042_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
535
462
-
Phe
GAA
[ENA]
¡û
>WENV170595740
FUFK011947389
[FUFK] metagenome; unknown
318
391
+
Phe
GAA
[ENA]
¡û
>WENV170840729
MDSZ01209899
[MDSZ] marine metagenome; seawater
6441
6368
-
Phe
GAA
[ENA]
¡û
>WENV170867534
MDTB01147618
[MDTB] marine metagenome; seawater
3129
3056
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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