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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197066 (9 seq.)
>WENV170196214
CEPK01030342
[CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
793
717
-
Arg
TCT
[ENA]
¡û
>WENV170261396
CERB01069490
[CERB] marine metagenome genome assembly TARA_072_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3263
3339
+
Arg
TCT
[ENA]
¡û
>WENV170348589
CETG01339025
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
598
522
-
Arg
TCT
[ENA]
¡û
>WENV170353141
CETH01440720
[CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
105
181
+
Arg
TCT
[ENA]
¡û
>WENV170643439
JFJP01056348
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3813
3889
+
Arg
TCT
[ENA]
¡û
>WENV170821907
MDSY01030592
[MDSY] marine metagenome; seawater
24812
24736
-
Arg
TCT
[ENA]
¡û
>WENV170822652
MDSY01043919
[MDSY] marine metagenome; seawater
26987
26911
-
Arg
TCT
[ENA]
¡û
>WENV170830083
MDSZ01020496
[MDSZ] marine metagenome; seawater
2833
2909
+
Arg
TCT
[ENA]
¡û
>WENV170840705
MDSZ01209475
[MDSZ] marine metagenome; seawater
3051
3127
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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