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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197127 (36 seq.)
>W131182420
ARQJ01000002
Bacillota
Salinicoccus albus DSM 19776 [ARQJ]
1295
1370
+
Met
CAT
[ENA]
¡û
>W131182428
ARQJ01000012
Bacillota
Salinicoccus albus DSM 19776 [ARQJ]
35075
35150
+
Met
CAT
[ENA]
¡û
>C171115264
CP021058
Bacillota
Macrococcus caseolyticus IMD0819 [CP021058]
1811488
1811413
-
Met
CAT
-
¡û
>C171115276
CP021058
Bacillota
Macrococcus caseolyticus IMD0819 [CP021058]
1739476
1739401
-
Met
CAT
-
¡û
>WENV183713703
PDWI01149719
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
806
881
+
fMet
CAT
[ENA]
¢þ
>C181178871
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
359132
359207
+
Met
CAT
-
¡û
>C181178878
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
360454
360529
+
Met
CAT
-
¡û
>C181178926
CP029477
Bacillota
Lactobacillus kullabergensis ESL0186 [CP029477]
470125
470200
+
Met
CAT
-
¡û
>C181178933
CP029477
Bacillota
Lactobacillus kullabergensis ESL0186 [CP029477]
471161
471236
+
Met
CAT
-
¡û
>C181179874
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
477435
477510
+
Met
CAT
-
¡û
>C181179881
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
478556
478631
+
Met
CAT
-
¡û
>W1911160256
NPNH01000002
Bacillota
Lactobacillus panisapium 2·î3Æü [NPNH]
157
232
+
Met
CAT
[ENA]
¡û
>W1911160291
NPNH01000015
Bacillota
Lactobacillus panisapium 2·î3Æü [NPNH]
357
282
-
Met
CAT
[ENA]
¡û
>W1810058629
PDKP01000001
Bacillota
Lactobacillus apis LMG 26964 [PDKP]
1484
1559
+
Met
CAT
[ENA]
¡û
>W1810151993
PIWL01000015
Bacillota
Macrococcus caseolyticus 5194_2_25 [PIWL]
1300
1375
+
Met
CAT
[ENA]
¡û
>W1810152005
PIWL01000015
Bacillota
Macrococcus caseolyticus 5194_2_25 [PIWL]
48927
49002
+
Met
CAT
[ENA]
¡û
>W1810189140
PKIV01000026
Bacillota
Lactobacillus crispatus UMB0824 [PKIV]
9794
9719
-
Met
CAT
[ENA]
¡û
>W1810603451
QGLG01000002
Bacillota
Lactobacillus melliventris ESL0184 [QGLG]
185928
186003
+
Met
CAT
[ENA]
¡û
>W1810603459
QGLG01000002
Bacillota
Lactobacillus melliventris ESL0184 [QGLG]
227531
227606
+
Met
CAT
[ENA]
¡û
>C151053156
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
485625
485700
+
Met
CAT
[Ensembl]
¡û
>C151053163
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
486747
486822
+
Met
CAT
[Ensembl]
¡û
>C151081564
CP011366
Bacillota
Salinicoccus halodurans H3B36 [CP011366]
1839396
1839321
-
Met
CAT
[Ensembl]
¡û
>W1511347231
JRJB01000026
Bacillota
Lactobacillus sp. wkB10 [JRJB]
1088
1013
-
Met
CAT
[ENA]
¡û
>W1511347238
JRJB01000026
Bacillota
Lactobacillus sp. wkB10 [JRJB]
82
7
-
Met
CAT
[ENA]
¡û
>W1511501563
JXBY01000013
Bacillota
Lactobacillus kullabergensis Biut2 [JXBY]
934
1009
+
Met
CAT
[ENA]
¡û
>W1511501570
JXBY01000013
Bacillota
Lactobacillus kullabergensis Biut2 [JXBY]
1970
2045
+
Met
CAT
[ENA]
¡û
>W1511505327
JXJR01000005
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
926
1001
+
Met
CAT
[ENA]
¡û
>W1511505334
JXJR01000005
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
2047
2122
+
Met
CAT
[ENA]
¡û
>W1511505416
JXLG01000005
Bacillota
Lactobacillus apis Hma11 [JXLG]
927
1002
+
Met
CAT
[ENA]
¡û
>W1511505423
JXLG01000005
Bacillota
Lactobacillus apis Hma11 [JXLG]
2251
2326
+
Met
CAT
[ENA]
¡û
>W1511505513
JXLI01000009
Bacillota
Lactobacillus melliventris Hma8 [JXLI]
935
1010
+
Met
CAT
[ENA]
¡û
>W1511505520
JXLI01000009
Bacillota
Lactobacillus melliventris Hma8 [JXLI]
1927
2002
+
Met
CAT
[ENA]
¡û
>W1610514752
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
793157
793082
-
Met
CAT
[ENA]
¡û
>W1710500435
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
794286
794211
-
Met
CAT
[ENA]
¡û
>W1710500442
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
793157
793082
-
Met
CAT
[ENA]
¡û
>W1710567872
FOTB01000006
Bacillota
Salinicoccus halodurans [FOTB]
230884
230809
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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