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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197293 (32 seq.)
>W1711005317
LQNM01000017
Bacillota
Pediococcus pentosaceus [LQNM]
198
271
+
Thr
GGT
[ENA]
¡û
>W1711068950
LSFE01000010
Bacillota
Pediococcus pentosaceus [LSFE]
215
288
+
Thr
GGT
[ENA]
¡û
>W1711166869
LVVN01000013
Bacillota
Weissella halotolerans [LVVN]
686
759
+
Thr
GGT
[ENA]
¡û
>C171034276
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
902767
902843
+
Thr
GGT
-
¡û
>C171034333
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
902763
902839
+
Thr
GGT
-
¡û
>C171119470
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1514232
1514159
-
Thr
GGT
-
¡û
>C171126488
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1490721
1490648
-
Thr
GGT
-
¡û
>C017403
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
282936
283009
+
Thr
GGT
[Ensembl]
¡û
>WENV180334451
OBLF01013654
[OBLF] metagenome; feces
172
245
+
Thr
GGT
[ENA]
¢þ
>WENV180349340
OBLO01035610
[OBLO] metagenome; feces
665
738
+
Thr
GGT
[ENA]
¢þ
>W141241949
CAHU01000001
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
100
173
+
Thr
GGT
[ENA]
¡û
>WENV170659179
JXWR01001170
[JXWR] soil metagenome; rice field; ambient CO2
122
195
+
Thr
GGT
[ENA]
¢þ
>C181042764
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1312833
1312906
+
Thr
GGT
-
¡û
>W09101478
AAEV01000015
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
37161
37088
-
Thr
GGT
[ENA]
¡û
>C191023214
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
255823
255896
+
Thr
GGT
-
¡û
>C141009476
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
293279
293352
+
Thr
GGT
[Ensembl]
¡û
>W1911631298
PUFB01000019
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
302075
302002
-
Thr
GGT
[ENA]
¡û
>W1810000843
BEWQ01000006
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
75
148
+
Thr
GGT
[ENA]
¡û
>C121006593
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
63414
63490
+
Thr
GGT
[Ensembl]
¡û
>C161092336
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1722991
1722918
-
Thr
GGT
[Ensembl]
¡û
>W1610057762
BBZC01000006
Bacillota
Pediococcus pentosaceus [BBZC]
865
938
+
Thr
GGT
[ENA]
¡û
>W1610528247
JQBB01000004
Bacillota
Pediococcus claussenii [JQBB]
219723
219647
-
Thr
GGT
[ENA]
¡û
>W1610528424
JQBF01000010
Bacillota
Pediococcus pentosaceus [JQBF]
34261
34188
-
Thr
GGT
[ENA]
¡û
>W1610530180
JQCQ01000076
Bacillota
Pediococcus argentinicus [JQCQ]
121
194
+
Thr
GGT
[ENA]
¡û
>W1610650064
LJIU01000002
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
75
148
+
Thr
GGT
[ENA]
¡û
>W1610855967
LQNM01000017
Bacillota
Pediococcus pentosaceus [LQNM]
198
271
+
Thr
GGT
[ENA]
¡û
>W1610909520
LSFE01000010
Bacillota
Pediococcus pentosaceus [LSFE]
215
288
+
Thr
GGT
[ENA]
¡û
>W1610977409
LVVN01000013
Bacillota
Weissella halotolerans [LVVN]
686
759
+
Thr
GGT
[ENA]
¡û
>W1710054461
BBZC01000006
Bacillota
Pediococcus pentosaceus [BBZC]
865
938
+
Thr
GGT
[ENA]
¡û
>W1710629837
JQBB01000004
Bacillota
Pediococcus claussenii [JQBB]
219723
219647
-
Thr
GGT
[ENA]
¡û
>W1710630014
JQBF01000010
Bacillota
Pediococcus pentosaceus [JQBF]
34261
34188
-
Thr
GGT
[ENA]
¡û
>W1710631770
JQCQ01000076
Bacillota
Pediococcus argentinicus [JQCQ]
121
194
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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